REAGENT | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti SNAP23 | Synaptic System | 111–213; RRID:AB_10805651 |
Anti SNAP23 | Synaptic System | 111–202; RRID:AB_887788 |
Anti KCC2 (D1R2R) | Cell Signaling Technology | 94725; RRID:AB_2800232 |
Anti-KCC2 [N1/12] | Abcam | Cat# ab134300 |
Anti Syntaxin 1A | Synaptic Systems | 110–111; RRID:AB_887848 |
Anti FLAG | Genscript | A 00187; RRID:AB_1720813 |
Anti Transferrin receptor | Thermofisher scientific | 13–6800; RRID:AB_2533029 |
β-Actin | MP Biomedicals | Cat# 0869100 |
β-Tubulin | Santa Cruz Biotechnology | sc5274; RRID:AB_2288090 |
Chemicals, Peptides and recombinant proteins | ||
Dulbecco's Modified Eagle's Medium (DMEM) | Biological Industries | 01-055-1A |
Fetal Calf Serum | Biological Industries | 04-001-1A |
pen-strep | Biological Industries | 03-031-1B |
L-Glutamine | Biological Industries | 03-020-1B |
Zinc sulfate heptahydrate | Sigma- Aldrich | z4750 |
BCECF-AM | Tef Labs | Not available |
BSA | MP Biomedicals | 216006980 |
TransIT-X2 | mirusbio | MIR 6000 |
DIOA 2-[(2-butyl-6,7-dichloro-2-cyclopentyl-1-oxo-3H-inden-5-yl)oxy]acetic acid |
Sigma-Aldrich | D129 |
Bumetanide 3-(butylamino)-4-phenoxy-5-sulfamoylbenzoic acid |
Sigma-Aldrich | B3023 |
Staurosporine | Santa Cruz Biotechnology | sc3510A |
Go6983 3-[1-[3-(dimethylamino)propyl]-5-methoxyindol-3-yl]-4-(1H-indol-3-yl)pyrrole-2,5-dione |
Sigma-Aldrich | G1918 |
BAY11-7085 (E)-3-(4-tert-butylphenyl)sulfonylprop-2-enenitrile | APExBio | B3033 |
VU0463271 N-cyclopropyl-N-(4-methyl-1,3-thiazol-2-yl)-2-(6-phenylpyridazin-3-yl)sulfanylacetamide |
Tocris | 4719 |
Iodoacetamide 2-iodoacetamide |
Sigma-Aldrich | I6125 |
Protease inhibitor cocktail | A2S | K1007 |
Papain 2-[[2-[[2-[(2-aminoacetyl)amino]acetyl]amino] -3-(4-hydroxyphenyl)propanoyl]amino]-5-(diaminomethylideneamino)pentanoic acid |
Worthington | LS033126 |
Hanks' balanced salts solution | Biological Industries | 02-015-1B |
HEPES 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid |
Biological Industries | 03-025-1C |
poly-D-lysine | Sigma-Aldrich | p0899 |
Neurobasal medium | GIBCO | 21103049 |
Fetal Bovine Serum | HyClone | sh30070.03 |
B-27 | GIBCO | 17504044 |
Glutamax-100X | GIBCO | 35050038 |
Gentamicin | Biological Industries | 03-035-1C |
Veriblot IP detection reagent | Abcam | ab131366; RRID:AB_2892718 |
protein A magbeads | GenScript | L00273 |
qPCR bio probe blue mix | PCR biosystem | pb20.25-05 |
Cytosine β-D-arabinofuranoside (AraC) | Sigma- Aldrich | c6645 |
SNAP23 blocking peptide | GRKKRRQRRRPQMDDLSPEEIQLRAHQVTDSEQ | GenScript USA Inc |
SCR blocking peptide | GRKKRRQRRRPQGFAESLFQSIEKESGFSCG | GenScript USA Inc |
Critical commercial assays | ||
Bio-Rad protein assay | Bio-Rad | 5000006 |
Q5 Site-Directed Mutagenesis Kit | New England Biolabs | E0554S |
EZ-Link Sulfo-NHS-Biotinylation Kit | Pierce Biotechnology, Thermoscientific | PIR-89881 |
Duolink in situ red starter kit | SigmaAldrich | DU092101 |
PureLink™ RNA Mini Kit | Invitrogene | 12183018a |
cDNA synthesis kit | Quanta bio | 95047 |
Experimental models: Cell lines | ||
HEK293 | ATCC | CRL-1573 |
SHSY-5Y | ATCC | CRL-2266 |
Experimental models: Organisms/strains | ||
C57BL/6JRccHsd mice | Envigo | 043 |
Oligonucleotides | ||
siGPR39 | 5′-CCAUGGAGUUCUACAGCAU-3′ | Sigma- Aldrich |
siSNAP23 | 5′-CCAACAGAGAUCGUAUUGA-3′ | Integrated DNA Technologies, IDT |
siKCC2 | 5′-CAAACAGAUGCAUUUAACCAAGAAT-3′ | Integrated DNA Technologies, IDT |
SCR | 5'-GCCCAGAUCCCUGUACGU-3′ | Sigma- Aldrich |
KCC2 S940A | 5′-GTCACGAGGCGCAATCCGGAG-3′ | 5′-TCATCTGTGATACTCTGGATCTC-3′ |
KCC2 S988A | 5′-CAGCTCCCCGGCCCCAGGGGA-3′ | 5′-CTGGGGCAGCTGGGAGCACTC-3′ |
KCC2 S986A | 5′-CCCCAGCAGCGCCCCGTCCCC-3′ | 5′-CAGCTGGGAGCACTCTGATCGTGG-3′ |
KCC2 T584A | 5′-GCTGCTGAGGGCACCCAACTG-3′ | 5′-GTCTGCACTGCACAGGCC-3′ |
KCC2 T906E | 5′-CTATGAGAAGGAGTTGGTGATGGAG-3′ | 5′-GTGTAAGCTGAGATGTCG-3′ |
KCC2 T1007E | 5′-GGTGCATCTCGAGTGGACCAAGGACAAG-3′ | 5′-TTCTCCGGATCTGTCTCC-3′ |
KCC2 S868A | 5′-GGATGACAATGCCATCCAGATGAAGAAG-3′ | 5′-ATCTGGGCCACAGTGAAG-3′ |
SPVSS | 5′-GAGGGCATCAAGGACTTC-3′ | 5′-GGGGCCCTTATTCTTCTC-3′ |
ΔNCD-KCC2 | 5′-ATGGGCGTGTACCTGCCG-3′ | 5′-TTTATCATCATCATCTTTATAA TCCATAGCCGAATTC-3′ |
ΔCTD-KCC2 | 5′-TGCTCTAGAGCATCATATC CCATCGCCCCACTCC-3′ |
|
SNAP23 S95/120A | 5′-GAACTTTGAGGCTGGAAAGAAC-3′ | 5′-TTTGTCCTATTACAAGGG-3′ |
5′-TAAGCAACCGGCCCGGATTACAAATG-3′ | 5′-GATACTACATTGCTAGGTG-3′ | |
Recombinant DNA | ||
human KCC2 cDNA | Prof. Gamba | |
mouse SNAP23 | OriGene | MR202271 |
Human GPR39 | OriGene- with mcherry addition and deletion of FLAG-MYC | www.origene.com/catalog/cdna-clones/expression-plasmids/rc219212/gpr39-nm_001508-human-tagged-orf-clone |