TABLE 1.
Origin and secondary typing of 25 interstate clusters identified by image analysis of IS6110-3′ RFLP patterns
Cluster no. | IS6110 copy no. | Origin (no. of isolates) | No. of isolates analyzedb | Matched by fingerprinting methoda
|
|||
---|---|---|---|---|---|---|---|
IS6110-3′ | IS6110-5′ | PGRS | Spoligotyping | ||||
1 | 6 | Arkansas (2), Michigan (1) | 2 | Y | Y | N | Y |
2 | 8 | Arkansas (1), Michigan (2) | 2 | N | N | N | N |
3 | 9 | Arkansas (1), California (2) | 2 | Y | Y | Y | Y |
4 | 9 | Arkansas (1), Massachusetts (2) | 2 | Y | N | N | NAc |
5 | 10 | Arkansas (1), Michigan (1) | 2 | Y | N | N | N |
6 | 10 | Arkansas (1), Texas (1) | 2 | N | N | N | Y |
7 | 10 | Arkansas (4), Massachusetts (1), Texas (11) | 3 | Y | Y | Y | Y |
8 | 10 | Arkansas (1), Michigan (2), Maryland (1) | 3 | Y | Y (2), N (1) | Y (2), N (1) | Y |
9 | 11 | Arkansas (1), Maryland (1) | 2 | N | N | N | N |
10 | 11 | Arkansas (1), Maryland (1) | 2 | Y | Y | Y | N |
11 | 11 | Arkansas (1), Michigan (1) | 2 | Y | N | N | Y |
12 | 11 | Arkansas (1), Michigan (1), California (1) | 3 | Y (2), N (1) | N | Y | Y |
13 | 11 | Arkansas (3), New Jersey (1) | 2 | Y | Y | Y | Y |
14 | 12 | Arkansas (2), Texas (1) | 2 | Y | N | Y | Y |
15 | 12 | Arkansas (2), Massachusetts (1), New York (5), California (2) | 4 | Y | Y (3), N (1) | N | Y (3), N (1) |
16 | 12 | Arkansas (7), Texas (3) | 2 | Y | Y | Y | Y |
17 | 12 | Arkansas (2), Michigan (1), California (4) | 3 | Y | Y | Y | Y |
18 | 12 | Arkansas (1), Maryland (1), Massachusetts (1) | 3 | Y (2), N (1) | Y (2), N (1) | Y (2), N (1) | Y |
19 | 12 | Arkansas (1), Texas (2) | 2 | Y | Y | Y | Y |
20 | 13 | Arkansas (1), Michigan (1) | 2 | N | N | N | Y |
21 | 13 | Arkansas (3), Texas (4), California (1) | 3 | Y | Y | Y | Y |
22 | 13 | Arkansas (2), California (1) | 2 | N | N | N | Y |
23 | 13 | Arkansas (1), California (6) | 2 | Y | Y | N | Y |
24 | 16 | Arkansas (1), Texas (7) | 2 | N | N | Y | Y |
25 | 21 | Arkansas (5), Texas (30), Maryland (1) | 3 | Y | Y | Y | Y |
Y, yes; N, no. Numbers in parentheses represent numbers of isolates.
One isolate from each state was analyzed.
NA, DNA from this cluster was not available for spoligotyping.