TABLE 3.
Apoptosis-related circular RNAs in brain tumors.
Genomic coordinate | Brain tumors | Circular RNAs | CircbaseID | Targets | Model | Type of cell line | Ref | |
---|---|---|---|---|---|---|---|---|
Up regulated circular RNA expression | q21.3 chr1:151206672–151212515 (+) | Glioblastoma | CircPIP5K1A | hsa_circ_0014130 | PI3K/AKT | In vivo | U87, TJ861, TJ905, U251, H4, A172 glioma tissues | Zheng et al. (2021) |
In vitro | mice | |||||||
q26.2 chr3:170013698–170015181 (+) | Glioblastoma | CircPRKCI | hsa_circ_0067934 | PI3K-AKT pathway | In vitro | GBM samples | Xin et al. (2019) | |
The LN18, U251, LN229, T98G and A172 cells | ||||||||
q26.2 chr3:170013698–170015181 (+) | Glioblastoma | CircPRKCI | hsa_circ_0067934 | caspase-3, caspase-9 and PARP | In vivo | A172 glioma cells/human glioma tissues/mice | Zhang et al. (2019b) | |
In vitro | ||||||||
q14.2 chr5:82832825–82838087 (+) | glioblastoma | CircVCAN | hsa_circ_0073237 | microRNA-1183 | In vitro | The 293T, U87, and U251 cells glioma tissues/mice | Zhu et al. (2020) | |
p21.2 chr6:37787306–38084515 (+) | Glioblastoma | CircZFAND3 | hsa_circ_0076248 | MiR‐181a/SIRT1 | In vivo | Human GBM samples/U251, U87 cell lines | Lei et al. (2019) | |
In vitro | Animal studies | |||||||
q14.3 chr6:86176777–86197207 (+) | Glioblastoma | CircNT5E | hsa_circ_0077231 | NT5E, SOX4, PI3KCA, p-Akt, p-Smad2 | In vivo | Tumor tissue samples/GBM cells (U87 and U251)/mice | Wang et al. (2018a) | |
In vitro | ||||||||
q32.1 chr7:128845043–128846428 (+) | Glioblastoma | CircSMO742 | hsa_circ_0001742 | miR-338-3p/SMO | In vivo | 10 human gliomas tissues/human glioblastoma A172 and U-87 MG/mice | Xiong et al. (2019) | |
In vitro | ||||||||
q24.21 chr8:128806778–128903244 (+) | Glioblastoma | CircPVT1 | hsa_circ_0085536 | miR-199a-5p | In vitro | human GBM tissues U539 and U251 cells | Chi et al. (2020) | |
YAP1 and PI3K/AKT | ||||||||
Capase-3 | ||||||||
Capase-9 | ||||||||
Ncadherin, Vimentin, Zeb1, E-cadherin | ||||||||
q34.12 chr9:130914461–130915734 (+) | Glioblastoma | CircLCN2 | hsa_circ_0088732 | N-cadherin, vimentin, E-cadherin | In vivo | tumor tissues/glioma cell lines | Jin et al. (2020b) | |
In vitro | LN229, U87-MG, U251, and A172/mice | |||||||
q12.11 chr13:21735928–21746820 (-) | Medulloblastoma | CircSKA3 | hsa_circ_0029696 | miR-383-5p/FOXM1 | In vivo | tissue samples/cell lines | Wang et al. (2020c) | |
Bcl2 and capase-3 | In vitro | DAOY and ONS-76 | ||||||
q13.3 chr13:38136718–38161065 (-) | Glioblastoma | CircPOSTN | hsa_circ_0030018 | Bcl2/bax/caspase 3 | In vivo | Human tissue sample/Glioma cell line (U251, LN229)/mice | Long et al. (2020) | |
In vitro | ||||||||
q15.2 chr15:43120125–43164956 (-) | Glioblastoma | CircTTBK2 | hsa_circ_0000594 | Mirna-520b/EZH2 | In vivo | glioma tissues | Yuan et al. (2019) | |
In vitro | A172 and U251 mice | |||||||
q15.2 chr15:43120125–43164956 (-) | Glioblastoma | CircTTBK2 | hsa_circ_0000594 | PI3K/AKT and ERK | In vivo | Human tissues specimens/Human U87 and U251 glioma cell lines mice/ | Zheng et al. (2017) | |
In vitro | ||||||||
p13.3 chr16:765172–767480 (+) | Glioblastoma | CircMETRN | hsa_circ_0037251 | miR-1229-3p/mTOR axis | In vivo | U373, U251 mice | Cao et al. (2019) | |
In vitro | ||||||||
q21.1 chr18:48189458–48190874 (+) | Glioblastoma | CircMAPK4 | hsa_circ_0047688 | p38/MAPK | In vitro in vivo | U138, U373 and U87 glioma cell lines/glioma tissues/mice | He et al. (2020) | |
p13.13 chr19:13183860–13192669 (+) | Glioblastoma | CircNFIX | hsa_circ_0049658 | Notch signaling pathway | In vivo | SF-539, SHG-44 | Xu et al. (2018b) | |
In vitro | U87 glioma tissue from mice | |||||||
p13.13 chr19:13183860–13192669 (+) | Glioblastoma | CircNFIX | hsa_circ_0049658 | miR-378e/RPN2 axis | In vivo | Patient samples T98, U251, SW1783,A172 | Ding et al. (2019) | |
In vitro | Mice | |||||||
q13.1 chrX:69606467–69607147 (+) | Glioblastoma | CircKIF4A | hsa_circ_0090956 | Wnt5a, β-catenin, c-Myc, cyclin D1/bcl2/bax | In vivo | glioma sample LN229, A172, SHG44, U251s mice | Huo et al. (2020) | |
Down regulated Circular RNA expression | q11.21 chr20:33001547–33037285 (+) | Glioblastoma | CircITCH | hsa_circ_0001141 | ITCH-Wnt/β-catenin | In vitro, human | cancer tissues U87, U251, A172, SHG44, LN229, T98G, SHG139 | Wang et al. (2018b) |