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. 2022 Jan 31;23:39. doi: 10.1186/s13059-022-02610-4

Fig. 7.

Fig. 7

Screenshots of AGAMEMNON’s Shiny application. (Top row) Visualization of microbial abundances through the use of Manhattan plots and Boxplots. (Middle row) Heatmap visualization and clustering using top N (in terms of abundance) microbes and PCA/MDS analysis. (Bottom row) Diversity index analysis and interactive tables showing the full lineage of microbes identified in the analyzed samples and differential expression analysis module and results