Table 2.
ROC Curve | Logistic regression | Q1-Q5 Odds Ratio (95% CIs) | |||
---|---|---|---|---|---|
AUC | Beta | p-value | |||
3-SNP scorei | GenomALC-1 | 0.665 ± 0.014 | 1.092 ± 0.099 | 2.90 × 10−28 | 5.99 (4.18 to 8.60) |
GenomALC-2 | 0.606 ± 0.014 | 0.669 ± 0.090 | 1.44 × 10−13 | 2.81 (2.03 to 3.89) | |
UK Biobank | 0.619 ± 0.014 | 0.729 ± 0.080 | 1.06 × 10−19 | 3.10 (2.32 to 4.14) | |
3 SNP scorei + BMI, coffee | GenomALC-1 | Not estimatediii | Not estimatediii | Not estimatediii | |
GenomALC-2 | Not estimatediii | Not estimatediv | Not estimatediv | ||
UK Biobank | 0.636 ± 0.015 | 0.748 ± 0.073 | 1.77 × 10−24 | 3.37 (2.38 to 4.78) | |
Comparisons based on coefficients from meta-analysis: | |||||
3-SNP-M scoreii | GenomALC-2 | 0.631 ± 0.014 | 0.909 ± 0.103 | 1.17 × 10−18 | 3.65 (2.59 to 5.15) |
5-SNP-M scoreii | GenomALC-2 | 0.626 ± 0.014 | 0.813 ± 0.096 | 2.96 × 10−17 | 3.66 (2.62 to 5.12) |
8-SNP-M scoreii | GenomALC-2 | 0.633 ± 0.014 | 0.807 ± 0.091 | 6.06 × 10−19 | 3.37 (2.43 to 4.66) |