Table 2.
Description | Gene Markers | None | Purity | ||
---|---|---|---|---|---|
Cor | P-value | Cor | P-value | ||
CD8+ T cell | CD8A | 0.246 | *** | 0.244 | *** |
CD8B | 0.117 | * | 0.117 | *** | |
T cell | CD3D | 0.179 | *** | 0.17 | *** |
CD3E | 0.22 | *** | 0.217 | *** | |
CD2 | 0.192 | *** | 0.185 | *** | |
B cell | CD19 | 0.306 | *** | 0.306 | *** |
CD79A | 0.303 | *** | 0.29 | *** | |
Monocyte | CD86 | 0.232 | *** | 0.218 | *** |
CD115 (CSF1R) | 0.453 | 0e+00 | 0.439 | *** | |
TAM | CCL2 | 0.363 | *** | 0.345 | *** |
CD68 | 0.202 | *** | 0.186 | *** | |
IL10 | 0.295 | *** | 0.282 | *** | |
M1 Macrophage | INOS (NOS2) | −0.091 | −0.082 | 1.12e-01 | |
IRF5 | 0.343 | *** | 0.337 | *** | |
COX2(PTGS2) | 0.093 | 0.071 | 1.67e-01 | ||
M2 Macrophage | CD163 | 0.34 | *** | 0.324 | *** |
VSIG4 | 0.355 | *** | 0.355 | *** | |
MS4A4A | 0.356 | *** | 0.34 | *** | |
Neutrophils | CD66b (CEACAM8) | −0.018 | 7.18e-01 | 0 | 1.00e+00 |
CD11b (ITGAM) | 0.403 | 0e+00 | 0.391 | *** | |
CCR7 | 0.456 | 0e+00 | 0.462 | *** | |
Natural killer cell | KIR2DL1 | 0.005 | 9.18e-01 | 0.015 | 7.66e-01 |
KIR2DL3 | −0.062 | 2.08e-01 | −0.073 | 1.55e-01 | |
KIR2DL4 | −0.124 | * | −0.13 | * | |
KIR3DL1 | 0.047 | 3.43e-01 | 0.052 | 3.17e-01 | |
KIR3DL2 | 0.019 | 6.93e-01 | 0.03 | 5.57e-01 | |
KIR3DL3 | −0.092 | −0.064 | 2.14e-01 | ||
KIR2DS4 | −0.031 | 5.35e-01 | −0.026 | 6.08e-01 | |
Dendritic cell | HLA-DPB1 | 0.263 | 6e-08 | 0.251 | 7.56e-01 |
HLA-DQB1 | 0.145 | ** | 0.129 | * | |
HLA-DRA | 0.154 | ** | 0.141 | ** | |
HLA-DPA1 | 0.0198 | *** | 0.185 | *** | |
BDCA-1(CD1C) | 0.515 | *** | 0.54 | *** | |
BDCA-4(NRP1) | 0.542 | 0e+00 | 0.518 | *** | |
CD11c (ITGAX) | 0.32 | *** | 0.304 | *** | |
Th1 | T-bet (TBX21) | 0.216 | *** | 0.221 | *** |
STAT4 | 0.268 | *** | 0.27 | *** | |
STAT1 | 0.012 | 8.11e-01 | 0.024 | 6.47e-01 | |
IFN-γ (IFNG) | −0.128 | ** | −0.124 | ** | |
TNF-α (TNF) | 0.08 | 1.05e-01 | 0.054 | 2.91e-01 | |
Th2 | GATA3 | 0.364 | 2.39e-14 | 0.376 | *** |
STAT6 | 0.319 | 2.87e-11 | 0.321 | *** | |
STAT5A | 0.418 | 5.1e-19 | 0.415 | *** | |
IL13 | 0.075 | 1.26e-01 | 0.089 | ||
Tfh | BCL6 | 0.549 | 4.65e-34 | 0.532 | *** |
IL21 | 0.027 | 5.8e-01 | 0.027 | 6.02e-01 | |
Th17 | STAT3 | 0.422 | 0e+00 | 0.406 | *** |
IL17A | −0.249 | 2.86e-07 | −0.264 | *** | |
Treg | FOXP3 | 0.203 | 3.18e-05 | 0.198 | *** |
CCR8 | 0.277 | 9.61e-09 | 0.271 | *** | |
STAT5B | 0.563 | 0e+00 | 0.542 | *** | |
TGFβ (TGFB1) | 0.598 | 1.32e-41 | 0.595 | *** | |
T cell exhaustion | PD-1 (PDCD1) | 0.195 | 6.76e-05 | 0.195 | *** |
CTLA4 | 0.061 | 2.16e-01 | 0.049 | 3.41e-01 | |
LAG3 | 0.07 | 1.53e-01 | 0.071 | 1.66e-01 | |
TIM-3 (HAVCR2) | 0.241 | 7.2e-07 | 0.233 | *** | |
GZMB | −0.125 | * | −0.144 | ** |
Note: P-value significant codes: 0≤***≤0.001≤**≤0.01≤*≤0.05.