Fig. 2.

Number of genes being upregulated or downregulated in protoplasts 4 h and 24 h after transfection as well as protonema (PN) compared to freshly isolated protoplasts (0 h). (a) The number of DEGs identified in one haploid line (Haploid A, brown) and in one diploid line (Diploid A, blue). DEGs are combined from identification in the microarray data (filtered for a |log2 fold change|> 1 and p < 0.001) and the SuperSAGE data (filtered for a GFOLD(0.01) value of < −1 or > 1). (b) Overlap between the upregulated genes at 24 h in the haploid line with the upregulated genes at 24 h in the diploid line. (c) Overlap between the downregulated genes at 24 h in the haploid line with the downregulated genes at 24 h in the diploid line