Table 2.

Number of DEGs between diploid and haploid cells at different time-points after transfection

Sample	DEGs in microarray	DEGs in SuperSAGE	Overlap of DEGs in microarray and SuperSAGE
0 h protoplasts	36	426	18
4 h protoplasts	88	2328	21
24 h protoplasts	43	3010	21
Protonema	67	0	0

Microarray and SuperSAGE analysis were performed on cells from Diploid A compared to cells from Haploid A. DEGs from the microarray experiment were determined with the Expressionist Analyst Pro software and were filtered for |log2 fold change|> 1 and p < 0.001. The SuperSAGE data analysis was performed with GFOLD and DEGs were filtered for a GFOLD(0.01) value of <  − 1 or > 1