Table 3.
Primers for quantitative PCR
| Gene | Accession number | Forward primer (5′→3′) | Reverse primer (5′→3′) | Final primer concentration (nM) | Product size (bp) | Reference |
|---|---|---|---|---|---|---|
| ABCB1 | NM_000927.4 | AAATTGGCTTGACAAGTTGTATATGG | CACCAGCATCATGAGAGGAAGTC | 300 | 85 | RTPrimerDB ID: 3512 |
| ACACA | NM_198838 | CATGCGGTCTATCCGTAGGTG | GTGTGACCATGACAACGAATCT | 300 | 77 | PrimerBank MGH-PGA ID: 38679973c2 |
| ACTB | NM_001101.3 | ACTGGGACGACATGGAGAAA | ATAGCACAGCCTGGATAGCA | 300 | 189 | (51) |
| DDIT3 (CHOP) | NM_001195053.1 | TTCGGGACACTGTCCA | CAGCCAAGCCAGAGAAG | 300 | 162 | (52) |
| B2M | NM_004048.2 | CTCCGTGGCCTTAGCTGTG | TTTGGAGTACGCTGGATAGCCT | 300 | 69 | RTPrimerDB ID 3534 |
| FASN | NM_004104 | AAGGACCTGTCTAGGTTTGATGC | TGGCTTCATAGGTGACTTCCA | 300 | 106 | PrimerBank MGH-PGA ID 41872630c1 |
| GAPDH | NM_002046.3 | GCCAAAAGGGTCATCATCTC | GTAGAGGCAGGGATGATGTTC | 300 | 287 | (50) |
| HMGCL | NM_001166059 | GTGTCTCCTAAGTGGGTTCCC | TGGGTAGTTGATGCCAGGAAA | 300 | 84 | PrimerBank MGH-PGA ID 260654707c2 |
| RNA18SN1 | NR_145820.1 | CTTAGAGGGACAAGTGGCG | ACGCTGAGCCAGTCAGTGTA | 300 | 107 | (53) |
| TBP | NM_001172085.1 | CACGAACCACGGCACTGATT | TTTTCTTGCTGCCAGTCTGGAC | 300 | 89 | RTPrimerDB ID 8098 |
| TUBB2A | NM_001069.3 | ATCAGCAAGATCCGGGAAGAG | CCGTGTCTGACACCTTGGGT | 300 | 82 | RTPrimerDB ID 2758 |