TABLE 2.
Annotation of the novel mutations of the ARSB gene.
| Variant | Mutation type | dbSNP ID | Allele frequency (gnomAD) | Mutation Taster | PolyPhen-2 | SIFT | PROVEAN | Criteria ACMG | Variant classification (ACMG category) |
|---|---|---|---|---|---|---|---|---|---|
| NM_000046.5:c.304C>G (NP_000037.2p:Arg102Gly) | missense | No | NA | Disease causing | deleterious | deleterious | Deleterious | PM1, PM2, PP2, PP3 | Likely pathogenic |
| NM_000046.5:c.533A>G NP_000037.2p:His178Arg | missense | No | NA | Disease causing | deleterious | deleterious | Deleterious | PM1, PM2, PM5, PP2, PP3 | Likely pathogenic |
| NM_000046.5:c.941T>C NP_000037.2p:Leu314Pro | missense | No | NA | Disease causing | deleterious | deleterious | Deleterious | PM1, PM2, PP2, PP3 | Likely pathogenic |
| NM_000046.5:c.447_456del NP_000037.2:p.Gly149fs | Frame-shift deletion | No | NA | Disease causing | NA | NA | NA | PVS1, PM2, PP3 | Pathogenic |
| NM_000046.5:c.990_1003del NP_000037.2:p.Phe331fs | Frame-shift deletion | No | NA | Disease causing | NA | NA | NA | PVS1, PM2, PP3 | Pathogenic |