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. Author manuscript; available in PMC: 2022 Feb 1.
Published in final edited form as: Cell Rep. 2021 Apr 6;35(1):108933. doi: 10.1016/j.celrep.2021.108933

Table 1.

Occurrence of NxT and NxS sequons in the BG505 sequence compared to 6,516 unique Env sequences found in the Los Alamos database

Frequency in natural isolatesa
Glycan occupancy (%)
Glycan BG505 Motif % NxT % NxS % no PNGS

N88 NxT NVT 98.2 0.4 1.4 >95
N133 NxT NVT 15.0 3.0 82.0 75
N137 NxT NIT 20.1 3.5 76.4 >95
N156* NxS* NCS* 8.6* 87.6* 3.8* >95*
N160 NxT NMT 88.9 2.1 9.0 >95
N190* NxS* NRS* ND*,b ND*,b ND*,b 80*
N190c* NxS* NNS* ND*,b ND*,b ND*,b 75*
N197* NxS* NTS* 1.1* 96.8* 2.1* 90*
N234 NxT NGT 74.8 5.0 20.2 >95
N262* NxS* NGS* 0.2* 98.9* 0.9* >95*
N276 NxT NIT 76.5 18.5 5.1 >95
N295 NxT NCT 58.2 1.5 40.4 >95
N301 NxT NNT 93.7 0.2 6.2 >95
N332* NxS* NVS* 3.0* 68.5* 28.5* >95*
N339 NxT NET 65.1 0.1 34.8 >95
N355 NxT NNT 72.8 1.6 25.5 >95
N363* NxS* NSS* 0.4* 7.7 91.9* >95*
N386* NxS* NTS* 40.0* 46.8* 13.2* >95*
N392 NxT NST 70.0 9.2 20.8 >95
N398* NxS* NTS* 11.0* 2.9* 86.1* >95*
N406 NxT NST 2.7 0.5 96.8 >95
N411* NxS* NDS* 44.4* 1.3* 54.3* >95*
N448 NxT NIT 87.4 0.1 12.5 >95
N463 NxT NST NDb NDb NDb >95
N611* NxS* NSS* 11.6* 86.8* 1.6* 40*
N618* NxS* NLS* 16.6* 75.3* 8.1* >95*
N625 NxT NMT 96.2 0.0 3.8 >95
N637 NxT NYT 92.5 3.8 3.7 >95

The occupancy of each PNGS on the BG505 SOSIP.v4.1 trimer is also recorded.

*

Indicates the PNGS that have an NxS motif.

a

Data obtained from 6,516 unique HIV envelope sequences found in the Los Alamos database (https://www.hiv.lanl.gov).

b

PNGS are located in highly variable regions and the specific sites differ between the natural isolates, making reliable calculations not possible.