Table 1.
Frequency in natural isolatesa |
Glycan occupancy (%) | |||||
---|---|---|---|---|---|---|
Glycan | BG505 | Motif | % NxT | % NxS | % no PNGS | |
| ||||||
N88 | NxT | NVT | 98.2 | 0.4 | 1.4 | >95 |
N133 | NxT | NVT | 15.0 | 3.0 | 82.0 | 75 |
N137 | NxT | NIT | 20.1 | 3.5 | 76.4 | >95 |
N156* | NxS* | NCS* | 8.6* | 87.6* | 3.8* | >95* |
N160 | NxT | NMT | 88.9 | 2.1 | 9.0 | >95 |
N190* | NxS* | NRS* | ND*,b | ND*,b | ND*,b | 80* |
N190c* | NxS* | NNS* | ND*,b | ND*,b | ND*,b | 75* |
N197* | NxS* | NTS* | 1.1* | 96.8* | 2.1* | 90* |
N234 | NxT | NGT | 74.8 | 5.0 | 20.2 | >95 |
N262* | NxS* | NGS* | 0.2* | 98.9* | 0.9* | >95* |
N276 | NxT | NIT | 76.5 | 18.5 | 5.1 | >95 |
N295 | NxT | NCT | 58.2 | 1.5 | 40.4 | >95 |
N301 | NxT | NNT | 93.7 | 0.2 | 6.2 | >95 |
N332* | NxS* | NVS* | 3.0* | 68.5* | 28.5* | >95* |
N339 | NxT | NET | 65.1 | 0.1 | 34.8 | >95 |
N355 | NxT | NNT | 72.8 | 1.6 | 25.5 | >95 |
N363* | NxS* | NSS* | 0.4* | 7.7 | 91.9* | >95* |
N386* | NxS* | NTS* | 40.0* | 46.8* | 13.2* | >95* |
N392 | NxT | NST | 70.0 | 9.2 | 20.8 | >95 |
N398* | NxS* | NTS* | 11.0* | 2.9* | 86.1* | >95* |
N406 | NxT | NST | 2.7 | 0.5 | 96.8 | >95 |
N411* | NxS* | NDS* | 44.4* | 1.3* | 54.3* | >95* |
N448 | NxT | NIT | 87.4 | 0.1 | 12.5 | >95 |
N463 | NxT | NST | NDb | NDb | NDb | >95 |
N611* | NxS* | NSS* | 11.6* | 86.8* | 1.6* | 40* |
N618* | NxS* | NLS* | 16.6* | 75.3* | 8.1* | >95* |
N625 | NxT | NMT | 96.2 | 0.0 | 3.8 | >95 |
N637 | NxT | NYT | 92.5 | 3.8 | 3.7 | >95 |
The occupancy of each PNGS on the BG505 SOSIP.v4.1 trimer is also recorded.
Indicates the PNGS that have an NxS motif.
Data obtained from 6,516 unique HIV envelope sequences found in the Los Alamos database (https://www.hiv.lanl.gov).
PNGS are located in highly variable regions and the specific sites differ between the natural isolates, making reliable calculations not possible.