Table 3. All PDB entries that match Hjc_15-6 (chain A) with a Z-score of >4, a %id PDB of ≥20 and a Lali (length of alignment) of ≥73 using the DALI server.
All corresponding proteins are Hj-resolving enzymes that originate from archaeal and thermophilic species. R.m.s.d. values are given from the lowest to the highest value noted for all compared chains of each species, and the PDB code of the best matching molecule is indicated in bold.
| PDB entry | Protein name | UniProtKB entry | Protein length | R.m.s.d. (Å) | Species |
|---|---|---|---|---|---|
| 2wiz (chain B)/2wcz/2wcw/2wj0/2wiw | Holliday-junction resolving enzyme Hjc | O28314 (HJC_ARCFU) | 139 | 2.8–3.1 | Archaeoglobus fulgidus |
| 1ob8 (chain B) | Holliday-junction resolving enzyme Hje | Q97YX6 (HJE_SACS2) | 135 | 3.0–3.1 | Saccharolobus solfataricus |
| 1ipi (chain B)/1gef | Holliday-junction resolving enzyme Hjc | E7FHX4 (HJC_PYRFU) | 123 | 3.0–3.1 | Pyrococcus furiosus |
| 1ob9 (chain A)/4tkd/1hh1 | Holliday-junction resolving enzyme Hjc | Q7LXU0 (HJC_SACS2) | 143 | 3.0–4.1 | Saccharolobus solfataricus |