Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2020 Dec 27;43(1):207–233. doi: 10.1002/hbm.25326

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2020 The Authors. Human Brain Mapping published by Wiley Periodicals LLC.

This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.

PMC Copyright notice

Overall quality control (QC) flow scheme for a FreeSurfer‐based hippocampal subfield study. Depending on local pipelines, general QC steps regarding the raw data quality, motion artifacts and complete coverage may be performed directly on the picture archiving system and be study‐independent. A general inspection of the cortical/subcortical segmentation result of FS is recommended before subfield specific operations. Steps 2–7 are supported by a script package written in MATLAB, R, and Shell. “freeview + subfields” refers to an individual check using the interactive FS viewing tool (https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields)