Table 2. Comparison of prediction performance under different classification models on 31 linear RNA datasets.
dataset | CRBPDL | iCircRBP-DHN | CRIP | iDeepS | DeepBind | CSCRites | CircSLNN |
---|---|---|---|---|---|---|---|
AGO1234 | 0.8178 | 0.788±0.041 | 0.737±0.005 | 0.708 | 0.687 | 0.708±0.004 | 0.662±0.015 |
AGO2MNAS | 0.7995 | 0.736±0.069 | 0.598±0.009 | 0.564 | 0.535 | 0.583±0.005 | 0.557±0.007 |
2-bingding_1 | 0.9353 | 0.925±0.011 | 0.862±0.004 | 0.788 | 0.811 | 0.842±0.003 | 0.795±0.006 |
2-bingding_2 | 0.9439 | 0.929±0.014 | 0.852±0.007 | 0.831 | 0.814 | 0.828±0.003 | 0.754±0.004 |
AGO2 | 0.9088 | 0.800±0.010 | 0.638±0.006 | 0.639 | 0.585 | 0.636±0.005 | 0.562±0.017 |
eIF4AIII_1 | 0.9753 | 0.963±0.004 | 0.952±0.001 | 0.942 | 0.925 | 0.937±0.004 | 0.894±0.005 |
eIF4AIII_2 | 0.9851 | 0.963±0.006 | 0.954±0.001 | 0.945 | 0.933 | 0.944±0.002 | 0.897±0.006 |
ELVAL1-1 | 0.9482 | 0.939±0.006 | 0.918±0.002 | 0.914 | 0.903 | 0.910±0.001 | 0.882±0.005 |
ELVAL1-MNASE | 0.7325 | 0.695±0.050 | 0.604±0.007 | 0.567 | 0.546 | 0.581±0.010 | 0.520±0.13 |
ELVAL1-A | 0.9377 | 0.922±0.006 | 0.898±0.002 | 0.888 | 0.869 | 0.876±0.002 | 0.845±0.006 |
ELVAL1-2 | 0.9482 | 0.943±0.002 | 0.926±0.001 | 0.937 | 0.914 | 0.925±0.001 | 0.898±0.002 |
EWSR1 | 0.9217 | 0.918±0.005 | 0.912±0.003 | 0.919 | 0.882 | 0.884±0.001 | 0.851±.004 |
FUS | 0.9596 | 0.947±0.007 | 0.941±0.001 | 0.934 | 0.926 | 0.907±0.002 | 0.905±0.007 |
mut-FUS | 0.9621 | 0.946±0.006 | 0.939±0.001 | 0.938 | 0.915 | 0.907±0.002 | 0.9070.013 |
IGF2BP1-3 | 0.8156 | 0.781±0.031 | 0.693±0.005 | 0.691 | 0.685 | 0.703±0.005 | 0.597±0.013 |
hnRNPC-1 | 0.9514 | 0.952±0.009 | 0.963±0.001 | 0.966 | 0.954 | 0.936±0.004 | 0.935±0.004 |
hnRNPC-2 | 0.9891 | 0.974±0.002 | 0.985±0.000 | 0.982 | 0.976 | 0.967±0.002 | 0.962±0.001 |
hnRNPL-1 | 0.8583 | 0.829±0.032 | 0.748±0.005 | 0.659 | 0.761 | 0.650±0.007 | 0.670±0.011 |
hnRNPL-2 | 0.7995 | 0.761±0.027 | 0.740±0.007 | 0.671 | 0.74 | 0.636±0.004 | 0.654±0.014 |
HnRNPL-like | 0.8008 | 0.779±0.021 | 0.685±0.010 | 0.644 | 0.708 | 0.632±0.010 | 0.636±0.014 |
MOV10 | 0.8971 | 0.885±0.010 | 0.814±0.002 | 0.807 | 0.803 | 0.803±0.003 | 0.764±0.010 |
NSUN2 | 0.8681 | 0.832±0.008 | 0.865±0.003 | 0.789 | 0.847 | 0.798±0.004 | 0.776±0.015 |
PUM2 | 0.9782 | 0.969±0.003 | 0.963±0.003 | 0.966 | 0.937 | 0.959±0.002 | 0.920±0.004 |
QKI | 0.9786 | 0.962±0.002 | 0.967±0.001 | 0.972 | 0.955 | 0.956±0.001 | 0.929±0.004 |
SFRS1 | 0.9236 | 0.912±0.007 | 0.886±0.004 | 0.888 | 0.86 | 0.885±0.003 | 0.794±0.008 |
TAF1S | 0.9336 | 0.971±0.002 | 0.963±0.001 | 0.961 | 0.956 | 0.922±0.004 | 0.925±0.002 |
TDP-43 | 0.946 | 0.928±0.013 | 0.911±0.002 | 0.914 | 0.902 | 0.913±0.003 | 0.841±0.009 |
TIA1 | 0.9636 | 0.945±0.011 | 0.930±0.001 | 0.916 | 0.908 | 0.891±0.001 | 0.894±0.005 |
TIAL1 | 0.9799 | 0.915±0.012 | 0.898±0.002 | 0.885 | 0.881 | 0.864±0.004 | 0.847±0.009 |
U2AF65 | 0.9782 | 0.971±0.007 | 0.968±0.001 | 0.965 | 0.959 | 0.918±0.002 | 0.932±0.003 |
Y2AF65 | 0.969 | 0.951±0.005 | 0.935±0.002 | 0.927 | 0.916 | 0.906±0.004 | 0.893±0.002 |
Ave | 0.9163 | 0.895±0.08 | 0.860±0.012 | 0.842 | 0.839 | 0.833±0.012 | 0.803±0.013 |