Table 3.
Top 10 significant Kyoto Encyclopedia of Genes and Genome pathways of SYNJ2 and differentially coexpressed genes
Term | Count | Genes | Fold Enrichment | P-value | FDR |
---|---|---|---|---|---|
Metabolic pathways | 59 | HEXA, HEXB, IL4I1, GLDC, ASPA, TDO2, SCLY, MAT1A, CYP7A1, HDC, GSTZ1, SYNJ2, HPD, AADAT, HMGCLL1, CYP1A1, ACADS, HAL, ALDH3B2, CYP26A1, ACADL, TAT, GLUL, CTH, SDS, AKR1B10, HAO2, UROC1, AKR1D1, OAT, PRODH, BCAT1, FUT5, AASS, KMO, GLS2, ARG1, MTHFS, CSAD, ADH4, HK3, ALDH4A1, ENO3, CDA, FUT2, INPP5B, BCKDHA, NOS1, AMACR, FTCD, ACACB, DBH, PCK1, CEL, AMDHD1, GCK, AGXT2, CYP4F2, CBS | 4.8963 | 6.60E-35 | 7.41E-32 |
Biosynthesis of antibiotics | 17 | AADAT, BCAT1, BCKDHA, AASS, TAT, PCK1, GLDC, ARG1, CTH, GCK, SDS, HK3, HAO2, ENO3, OAT, CBS, PRODH | 8.1120 | 1.05E-10 | 1.19E-07 |
Histidine metabolism | 7 | AMDHD1, ASPA, HDC, FTCD, HAL, ALDH3B2, UROC1 | 32.1878 | 4.49E-08 | 5.04E-05 |
Biosynthesis of amino acids | 9 | BCAT1, ARG1, GLUL, CTH, MAT1A, SDS, ENO3, TAT, CBS | 12.6452 | 3.86E-07 | 4.34E-04 |
Tyrosine metabolism | 7 | ADH4, GSTZ1, ALDH3B2, IL4I1, DBH, TAT, HPD | 20.2324 | 8.84E-07 | 9.94E-04 |
Primary bile acid biosynthesis | 5 | CYP39A1, CYP46A1, CYP7A1, AMACR, AKR1D1 | 29.7535 | 1.78E-05 | 0.0200 |
Alanine, aspartate and glutamate metabolism | 6 | GLS2, GLUL, ASPA, ALDH4A1, IL4I1, AGXT2 | 17.3420 | 1.95E-05 | 0.0219 |
Cysteine and methionine metabolism | 6 | CTH, MAT1A, SDS, IL4I1, TAT, CBS | 15.9729 | 2.95E-05 | 0.0332 |
Glycolysis/Gluconeogenesis | 6 | GCK, ADH4, HK3, ENO3, ALDH3B2, PCK1 | 9.0593 | 4.56E-04 | 0.5119 |
Glycine, serine and threonine metabolism | 5 | CTH, SDS, AGXT2, CBS, GLDC | 12.9695 | 5.23E-04 | 0.5865 |
FDR: false discovery rate.