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. 2022 Jan 19;12:786937. doi: 10.3389/fphar.2021.786937

TABLE 2.

OCA phenotype and genetic variants identified using NGS for each patient.

ID OCA Gene Variant Protein Occurrence in database/dbSNP ID/MAF gnomAD (v2.1) PP ACMG classification
IP1 OA HPS3 c.[65C > G]; [1193G > A] p.Pro22Arg - CADD: 29.1 VUS (PM1, PM2)
MutTaster, PolyPhen2
p.Cys398Tyr rs1360046176 CADD: 29.3 VUS (PM1, PM2, PP3)
MAF: 0,0007% SIFT, MutTaster, PolyPhen2
IP2 n.a. HPS5 c.[760G > T]; [760G > T] p.Val254Phe rs752603589 CADD: 28.1 VUS (PM1, PM2, PP3)
MAF:0.004% SIFT, MutTaster, PolyPhen2
IP3 OCA DTNBP1 c.(355 + 1_356–1)_(488 + 1_489–1)del; c.(355 + 1_356–1)_(488 + 1_489–1)del no dysbindin expression 1 - P (PVS1, PM1, PM2)

Transcripts: HPS3 (NM_032383.3), HPS5 (NM_181507.1), DTNBP1 (NM_032122.4). Abbr.: OCA, oculocutaneous albinism; OA, ocular albinism; n.a., not apparent; PP, in silico pathogenicity prediction; VUS, variant of uncertain significance; P, pathogenic.

1

Western Blot analysis.