TABLE 2.
T3SE candidates predicted in the genomes of Dickeya zeae MS2 and JZL7
| Accession no. of: |
NCBI accession no. | Product | Predicted hrp box (GGAACC-Nx-CCACNNA) | |
|---|---|---|---|---|
| MS2 | JZL7 | |||
| C1O30_RS00560 | JZL000100 | WP_013319992.1 | Hypothetical protein VfmS | |
| C1O30_RS00675 | JZL000138 | WP_102800815.1 | Hypothetical protein | |
| C1O30_RS00680 | JZL000139 | WP_102800816.1 | Hypothetical protein | |
| C1O30_RS00895 | JZL000183 | WP_102800840.1 | Murein hydrolase activator EnvC | |
| C1O30_RS01895 | JZL000383 | WP_102800904.1 | Type I-E CRISPR-associated protein Cse2/CasB | |
| C1O30_RS02135 | JZL000448 | WP_102800932.1 | Hypothetical protein | |
| C1O30_RS02140 | JZL000451 | WP_102800933.1 | Hypothetical protein | |
| C1O30_RS02185 | JZL000460 | WP_102800940.1 | Hypothetical protein | |
| C1O30_RS03200 | JZL000666 | WP_102801017.1 | Glycine dehydrogenase GcvP | |
| C1O30_RS03400 | JZL000710 | WP_019846222.1 | Hypothetical protein | |
| C1O30_RS04855 | JZL000906 | WP_019844323.1 | LOG family protein | |
| C1O30_RS05230 | JZL000962 | WP_023639126.1 | Hypothetical protein | |
| C1O30_RS08240 | JZL001538 | WP_102801528.1 | Alginate lyase family protein | |
| C1O30_RS08785 | JZL001698 | WP_023639967.1 | Hypothetical protein | |
| C1O30_RS11855 | JZL002390 | WP_012884524.1 | DUF1852 domain-containing protein | |
| C1O30_RS12170 | JZL002462 | WP_102801891.1 | Hypothetical protein | −241 GGAACT-N69-CCACCGA −133 |
| C1O30_RS12625 | JZL002555 | WP_102801925.1 | Anhydro-N-acetylmuramic acid kinase AnmK | |
| C1O30_RS13325 | JZL002697 | WP_019843821.1 | Flagellin FliC | |
| C1O30_RS13330 | JZL002698 | WP_102801989.1 | Flagellar filament capping protein FliD | |
| C1O30_RS13375 | JZL002707 | WP_102801991.1 | Flagellar hook-length control protein FliK | |
| C1O30_RS13415 | JZL002715 | WP_102801993.1 | Flagellar hook-filament junction protein FlgL | |
| C1O30_RS14125 | JZL002985 | WP_102802039.1 | Flagella biosynthesis regulator Flk | |
| C1O30_RS14425 | JZL003042 | WP_023640291.1 | General secretion pathway protein GspB | |
| C1O30_RS15345 | JZL003254 | WP_028085677.1 | Pectate lyase PelA | |
| C1O30_RS15350 | JZL003255 | WP_102802153.1 | Pectate lyase PelE | |
| C1O30_RS15355 | JZL003256 | WP_102802154.1 | Pectate lyase PelD | |
| C1O30_RS16815 | JZL003523 | WP_102802268.1 | Hypothetical protein | −590 GGAACA-N56-GCACCAA −522 |
| C1O30_RS18405 | JZL003848 | WP_102802410.1 | Hypothetical protein | |
| C1O30_RS19255 | JZL004042 | WP_102802473.1 | SPOR domain-containing protein | |
| C1O30_RS19500 | JZL004096 | WP_023640946.1 | Hypothetical protein | +22 GGAACG-N37-TCACCAA +71 |
| C1O30_RS19635 | JZL004123 | WP_102802502.1 | Uroporphyrinogen-III C-methyltransferase HemX | |
| C1O30_RS20330 | JZL004262 | WP_102802565.1 | Four-carbon acid sugar kinase family protein | |
| C1O30_RS20375 | JZL004272 | WP_102802574.1 | Cell envelope biogenesis protein TolA | |
| C1O30_RS20935 | JZL004396 | WP_038906084.1 | Der GTPase-activating protein YihI | |
| C1O30_RS00105 | WP_102800757.1 | Hypothetical protein | ||
| C1O30_RS02465 | WP_102800962.1 | Hypothetical protein | ||
| C1O30_RS02835 | WP_038915541.1 | Pectate lyase Pnl | ||
| C1O30_RS04030 | WP_102801114.1 | Hypothetical protein | ||
| C1O30_RS04130 | WP_102801119.1 | TonB family protein | ||
| C1O30_RS08565 | WP_102801570.1 | Hypothetical protein | ||
| C1O30_RS08570 | WP_102801571.1 | Hypothetical protein | ||
| C1O30_RS08580 | WP_102801572.1 | Hypothetical protein | ||
| C1O30_RS11100 | WP_102801796.1 | Type III secretion system effector DspE | −82 GGAACC-N15-CCACTCA −55 | |
| C1O30_RS11105 | WP_102801797.1 | Type III effector protein HrpZ | −110 GGAACC-N16-TCACTCA −82 | |
| C1O30_RS11110 | WP_102801798.1 | Pectate lyase HrpW | −98 GGAACT-N15-GTACTCA −71 | |
| C1O30_RS11125 | WP_102801801.1 | Type III effector HrpK | −70 GGAACT-N15-CCACTCA −43 | |
| C1O30_RS11560 | WP_023639571.1 | Harpin HrpN | −125 GGAACC-N15-TCACTCA −98 | |
| C1O30_RS11660 | WP_102801841.1 | Type III secretion system gatekeeper HrpJ | −73 GGAACC-N15-CCACATA −46 | |
| C1O30_RS11685 | WP_102801846.1 | Type III secretion protein HrpP | ||
| C1O30_RS15015 | WP_158653989.1 | Hypothetical protein | ||
| JZL000137 | Hypothetical protein | |||
| JZL000140 | Hypothetical protein | |||
| JZL000450 | Hypothetical protein | |||
| JZL001636 | Hypothetical protein | |||
| JZL001650 | Hypothetical protein | |||
| JZL001967 | Hypothetical protein | |||
| JZL002766 | Hypothetical protein | |||
| JZL002871 | Hypothetical protein | |||
| JZL002874 | Hypothetical protein | |||
| JZL002884 | Hypothetical protein | |||