Table 2.

Top scored three Molecular Complex Detection (MCODE) clusters and significantly enriched pathways. FDR: false discovery rate.

MCODE	Genes	Interactions	Gene symbols	Enriched pathways (FDR < 0.05)
1	61	1791	RPS27, RPS23, RPS14, RPL10L, RPL10, EIF3D, EIF3B, RPL24, RPS21, RPSA, NHP2L1, FBL, RPL7A, RPS16, RPS10, RPL19, RPL13, RPL4, RPS7, RPS3, RPL38, RPS26, RPL6, RPS4X, RPS3A, RPL18, RPL29, RPL14, RPS5, RPL35, RPS25, RPL3, RPL10A, RPS24, RPS15A, RPL12, RPL26, RPS19, RPL32, RPL18A, RPS11, RPL15, RPL36, RPL22, RPLP0, RPS2, RPL21, RPL13A, EIF4B, NSA2, EIF3K, EIF3F, EIF4A1, GNB2L1, EIF3A, EEF1B2, EIF3G, EEF1A1, EEF1G, EEF2, RPS6	hsa03010:ribosome
2	14	45	SPARC, GABBR1, TIMP1, CNR2, GNG7, CCL5, TGFB1, GNG11, GNG8, F13A1, P2RY12, CLU, ITIH4, ACTN1	NA
3	28	86	HLA-DPA1, HLA-DPB1, LSM7, HIST1H2AM, DNM3, CTTN, HIST1H2AI, HIST1H2BF, HLA-DRB1, HLA-DRB5, CIITA, H2AFJ, HIST1H2BK, HIST1H2AA, HIST1H2BB, HIST1H2AE, HIST2H2BE, RAN, HLA-DMA, DAB2, LDLRAP1, HLA-DQA1, SNRPD1, REPS1, HLA-DQB1, STON2, PPIH, RBMX	hsa05322:systemic lupus erythematosus hsa05310:asthma hsa05332:graft-versus-host disease hsa05330:allograft rejection hsa04940:type I diabetes mellitus hsa04612:antigen processing and presentation hsa04672:intestinal immune network for IgA production hsa05320:autoimmune thyroid disease hsa05150:Staphylococcus aureus infection hsa05416:viral myocarditis hsa05321:inflammatory bowel disease (IBD) hsa05145:toxoplasmosis hsa05034:alcoholism hsa05140:leishmaniasis hsa05323:rheumatoid arthritis hsa05164:influenza A hsa05152:tuberculosis hsa04514:cell adhesion molecules (CAMs) hsa04145:phagosome hsa05166:HTLV-I infection hsa05168:herpes simplex infection