Table 1.
Summary statistics of cucumber genome assemblies.
| Accession | Group | Total length (Mb) | No. of contigs | Contig N50a (Mb) | Completenessb (%) | No. of genes | Completenessb (%) | TE content (%) |
|---|---|---|---|---|---|---|---|---|
| 9930c | East-Asian | 224.8 | 174 | 8.9 | 97.7 | 24,714 | 95.5 | 32.5 |
| XTMC | East-Asian | 240.1 | 926 | 2.1 | 97.0 | 25,167 | 96.6 | 37.2 |
| Cu2 | East-Asian | 247.1 | 851 | 5.3 | 97.5 | 25,382 | 97.6 | 37.7 |
| Cuc37 | Eurasian | 238.4 | 967 | 3.8 | 97.4 | 24,490 | 94.0 | 37.2 |
| Gy14 | Eurasian | 239.4 | 926 | 2.1 | 97.4 | 25,042 | 95.6 | 35.2 |
| 9110gt | Eurasian | 242.9 | 830 | 3.9 | 97.2 | 24,992 | 96.5 | 38.5 |
| Cuc80 | Xishuangbanna | 237.4 | 923 | 4.3 | 97.7 | 24,578 | 96.4 | 36.1 |
| Cuc64 | Indian | 232.5 | 842 | 4.4 | 97.7 | 24,583 | 97.0 | 35.4 |
| W4 | Indian | 251.1 | 894 | 4.7 | 97.3 | 25,703 | 96.6 | 38.0 |
| W8 | Indian | 241.9 | 907 | 4.3 | 97.2 | 25,531 | 95.6 | 36.7 |
| Hx14 | Indian | 234.6 | 865 | 1.7 | 97.3 | 24,914 | 96.8 | 36.4 |
| Hx117 | Indian | 243.7 | 1,015 | 2.1 | 96.4 | 26,033 | 93.3 | 36.4 |
aN50 refers to the size above which half of the total length of the sequence set can be found.
bBased on BUSCO assessment.
cPublished reference genome of cucumber ‘9930’24.