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. 2022 Feb 3;13:682. doi: 10.1038/s41467-022-28362-0

Table 1.

Summary statistics of cucumber genome assemblies.

Accession Group Total length (Mb) No. of contigs Contig N50a (Mb) Completenessb (%) No. of genes Completenessb (%) TE content (%)
9930c East-Asian 224.8 174 8.9 97.7 24,714 95.5 32.5
XTMC East-Asian 240.1 926 2.1 97.0 25,167 96.6 37.2
Cu2 East-Asian 247.1 851 5.3 97.5 25,382 97.6 37.7
Cuc37 Eurasian 238.4 967 3.8 97.4 24,490 94.0 37.2
Gy14 Eurasian 239.4 926 2.1 97.4 25,042 95.6 35.2
9110gt Eurasian 242.9 830 3.9 97.2 24,992 96.5 38.5
Cuc80 Xishuangbanna 237.4 923 4.3 97.7 24,578 96.4 36.1
Cuc64 Indian 232.5 842 4.4 97.7 24,583 97.0 35.4
W4 Indian 251.1 894 4.7 97.3 25,703 96.6 38.0
W8 Indian 241.9 907 4.3 97.2 25,531 95.6 36.7
Hx14 Indian 234.6 865 1.7 97.3 24,914 96.8 36.4
Hx117 Indian 243.7 1,015 2.1 96.4 26,033 93.3 36.4

aN50 refers to the size above which half of the total length of the sequence set can be found.

bBased on BUSCO assessment.

cPublished reference genome of cucumber ‘9930’24.