TABLE 1.
Sample | Number of clean reads | GC content (%) | % ≥ Q30 (%) | Mapped reads (%) | Mapped ratio |
S1-1 | 21,187,529 | 45.81 | 95.73 | 18,189,961 | 85.85 |
S1-2 | 20,558,304 | 45.95 | 95.71 | 17,700,640 | 86.10 |
S1-3 | 20,467,384 | 46.01 | 95.65 | 17,629,023 | 86.13 |
S2-1 | 20,755,996 | 46.13 | 95.37 | 17,763,370 | 85.58 |
S2-2 | 20,235,253 | 46.12 | 95.33 | 17,379,672 | 85.89 |
S2-3 | 22,035,045 | 45.97 | 95.48 | 19,016,783 | 86.30 |
S3-1 | 22,962,814 | 46.69 | 95.09 | 19,984,499 | 87.03 |
S3-2 | 21,612,735 | 46.40 | 94.78 | 18,416,292 | 85.21 |
S3-3 | 21,190,300 | 46.53 | 94.94 | 18,062,959 | 85.24 |
S4-1 | 20,929,960 | 45.82 | 95.20 | 18,070,071 | 86.34 |
S4-2 | 20,900,762 | 46.14 | 95.45 | 18,154,223 | 86.86 |
S4-3 | 19,595,266 | 45.72 | 95.07 | 16,814,367 | 85.81 |
S5-1 | 22,375,253 | 45.68 | 95.23 | 19,202,416 | 85.82 |
S5-2 | 20,440,396 | 45.90 | 94.58 | 17,540,777 | 85.81 |
S5-3 | 23,577,643 | 45.89 | 95.16 | 20,235,517 | 85.83 |
S6-1 | 22,860,183 | 45.52 | 95.11 | 19,766,873 | 86.47 |
S6-2 | 20,797,301 | 45.97 | 95.40 | 17,849,805 | 85.83 |
S6-3 | 21,865,298 | 46.25 | 95.22 | 18,968,763 | 86.75 |
S1-1, S1-2, and S1-3 indicate the three biological replicates of stage 1 [30 days after pollination (DAP)]. S2-1, S2-2, and S2-3 indicate the three biological replicates of stage 2 (35 DAP). S3-1, S3-2, and S3-3 indicate the three biological replicates of stage 3 (42 DAP). S4-1, S4-2, and S4-3 indicate the three biological replicates of stage 4 (46 DAP). S5-1, S5-2, and S5-3 indicate the three biological replicates of stage 5 (53 DAP). S6-1, S6-2, and S6-3 indicate the three biological replicates of stage 6 (60 DAP).