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. 2020 May 13;1(8):772–780. doi: 10.34067/KID.0001342020

Table 4.

Pathogenic and likely pathogenic variants identified in exome reanalysis

Patient Age (yr) Gene Variant Genomic Coordinates (hg37) Clinical Diagnosis/Indication Initial Ordered Gene Set Family Historya
138 75 ADAMTS13 p.D187Hb chr9:g.136291338G>C aHUS aHUS No
302 30 ADAMTS13 p.Q725*b chr9:g.136307803C>T Thrombocytopenia aHUS No
318 19 COL4A4 p.R989fs chr2:g.227917021_227917022delCT ESKD and thrombotic microangiopathy aHUS No
p.R989fs chr2:g.227917021_227917022delCT
79 26 EYA1 p.Y226* chr1:g.248813510A>G ESKD due to membranoproliferative GN aHUS No
231 19 PKD1 p.R3277C chr16:g.2149956G>A ESKD due to C3 glomerulopathy and cystic kidneys. aHUS No
152 74 PKD1 p.A2375Vc chr16:g.2156891G>A ADPKD rule out aHUS aHUS No
198 33 PKD2 p.R213*c chr4:g.88940651C>T ADPKD rule out aHUS aHUS Yes
219 58 PKD2 p.R213*c chr4:g.88940651C>T ADPKD rule out aHUS aHUS Yes
195 <1 REN p.R43* chr1:g.204131263G>A Congenital ARF aHUS No
p.R43* chr1:g.204131263G>A
69 <1 SLC26A1 p.S358L chr4:g.983654G>A Neonatal aHUS aHUS No
p.T185M chr4:g.984938G>A
52 35 USH2A p.R4935*c chr1:g.215814065G>A Laurence–Moon–Biedl syndrome aHUS No
206 9 WT1 p.R462W chr11:g.32413566G>A aHUS aHUS No
119 17 LAMB2 p.C1058fs chr3:g.49161980_49161981delCA Gross hematuria AS Yes
NPHS2 p.R138Q chr1:g.179530462C>T
264 15 TRPC6 p.N125S chr11:g.101375326T>C Collapsing FSGS and thin basement membranes AS No
212 <1 ANKS6 p.L434fs chr9:g.101542538delA Congenital renal dysplasia, heart abnormalities, and hepatosplenomegaly NPHP No
c.1973-3C>G chr9:g.101530535G>C
268 <1 PBX1 p.Q48* chr1:g.164529201C>T Congenital renal dysplasia NPHP No
168 3 WDR19 p.L92* chr4:g.39191386T>G Congenital absence left kidney and enlarged, dysplastic right kidney NPHP No
p.N273D chr4:g.39207283A>G
96 9 COL4A5 c.2042–2A>T chrX:107845113A>T Nephrotic syndrome NS/FSGS Yes
197 37 PAX2 p.G107R chr10:102510464G>C Adult-onset FSGS NS/FSGS Yes
281 53 UMOD p.H177_R185del chr16:g.20360068_20360094del FSGS NS/FSGS Yes
67 64 EYA1 p.L513P chr8:g.72127681A>G Congenital renal dysplasia and hearing loss GRHPR No
134 10 BBS10 p.Y559* chr12:g.76740088G>T Cystic renal disease NS/FSGS, NPHP No
CEP104 p.Q335* chr1:g.3753972G>A

Variant pathogenicity assignments based upon American College of Medical Genetics and Genomics guidelines (20). chr, chromosome; aHUS, atypical hemolytic uremic syndrome; ADPKD, autosomal dominant polycystic kidney disease; AS, Alport syndrome; NPHP, cystic renal disease and nephronophthisis; NS, nephrotic syndrome.

a

First or second-degree relative with CKD or kidney transplant.

b

Variants were identified in patients that underwent testing before the addition of ADAMTS13.

c

Variants are associated with an established clinical diagnosis.