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. 2022 Feb 4;13:705. doi: 10.1038/s41467-022-28330-8

Table 1.

Missense variants with a complete deficit of observed homozygous carriers, versus an expected number in the population set of 153,054 Icelanders, that present in homozygous state in the clinical WGS set.

Genea Position (hg38) cDNA change Protein change MAF Iceland MAF Europeb O/E HMZ AR disease listed on OMIM ClinVar ID Previously reported as HMZ
SLC52A2 chr8:144360604 c.1016 T > C p.Leu339Pro 0.60% 0.01% 0/6 Brown-Vialetto-Van Laere syndrome, type 2 39577 Yes
SLC13A5 chr17:6703031 c.655 G > A p.Gly219Arg 0.49% 0.03% 0/4 Early infantile epileptic encephalopathy, type 25 140752 Yes
GLB1 chr3:33058265 c.557 A > C p.Glu186Ala 0.52% 2 × 10−3% 0/4 GM1-gangliosidosis NA Yes
CPSF3 chr2:9452920 c.1403 G > A p.Gly468Glu 0.41% NA 0/3 NA NA No
GNE chr9:36227397 c.1132 G > T p.Asp378Tyr 0.60% 0.03% 0/6 GNE-myopathy 283278 No

MAF minor allele frequency, O/E observed/expected, HMZ homozygous, AR autosomal recessive, NA not applicable.

aRefSeq transcripts are provided in Supplementary Data 1.

bBased on 64,603 WES/WGS non-Finnish European samples on gnomAD13.