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. 2022 Feb 4;23:99. doi: 10.1186/s12864-022-08343-9

Table 1.

Clinical characteristics of patients with known or potentially pathogenic mutations

Patient No Diagnosis Gender Onset age Heredity Protein change (dbSNP) APOE Function Pathogenic Population frequencya SIFT scoreb PolyPhen-2 scoreb
1 AD F 50 Yes PSEN1 P264L (rs63750301) ε3/ε4 Missense Yes 0.0000040 0 1
2 AD M 42 Yes PSEN1 P264L (rs63750301) ε3/ε4 Missense Yes 0.0000040 0 1
3 AD M 34 No PSEN1 M146V (rs63750306) ε3/ε3 Missense Yes - 0.01 0.985
4 AD M 65 Yes PSEN2 I144L (rs764718172) ε3/ε3 Missense Unknown 0.0000080 0.01 0.257
5 bvFTD M 69 Yes PSEN2 A252T (rs138836272) ε3/ε3 Missense Unknown 0.00023 0.42 0.172
FUS Δ229-231 (rs767564995) Deletion Unknown 0.00021 - -
6 AD M 59 Yes FUS Ser57Δ (rs777545405) ε4/ε4 Deletion Unknown 0.00017 - -
7 svPPA M 64 Yes FUS Δ166-167 (rs537605135) ε4/ε4 Deletion Unknown 0.00030 - -
8 AD F 57 Yes GRN A324V (rs758636128) ε3/ε3 Missense Unknown 0.000024 0.21 0.129
9 AD M 59 Yes MAPT V224G (rs141120474) ε4/ε4 Missense Unknown 0.0021 0 0.187
10 MCI M 61 Yes MAPT A239T (rs63750096) ε3/ε4 Missense Unknown 0.00063 0.27 0.079
11 AD M 56 Yes APOE R269G (rs267606661) ε3/ε4 Missense Unknown 0.00036 0 0.533
12 AD M 44 Yes APP Δ690-695 ε3/ε3 Deletion Yes - - -
13 AD M 40 Yes APP Δ690-695 ε3/ε3 Deletion Yes - - -

aPopulation frequency was obtained from gnomAD database, except for rs767564995 for which dbSNP was used

bPolyPhen-2 and SIFT scores were obtained using Ensembl Variant Effect Predictor. These scores are used to predict whether amino acid substitution is likely to affect protein function. The SIFT score ranges from 0.0 (deleterious) to 1.0 (tolerated). The PolyPhen-2 score ranges from 0.0 (tolerated) to 1.0 (deleterious)