Table 1.

List of Free Model Parameters and Their Nominal Values

Parameter name	Symbol	Nominal value (a.u.)
Oligomeric τ of size m	${\tau }_m$
Seed region	$v_{seed}$	$v_{EC}\left(entorhinal\right)$
Time scale of monomer production function $f_{\tau }\left(t\right)$	${\sigma }_f$	25
Network diffusivity/transmission rate for oligomer of size m	dm
Scaling constant that governs the relationship between dm and oligomer size m	${\sigma }_{diff}$	1
Global network “transmissibility” constant, governing relative propensity to aggregate in situ versus spread over network	$\beta$	1
Global constant relating aggregation rate to network diffusivity	c 1	1
Global constant relating monomer production rate to network diffusivity	c 2	0.05
Reaction kinetic rates for the aggregation of two polymers of lengths $jandk$	$a_{j,k}$
Scaling constant that governs the relationship between $a_{j,k}$ and oligomer sizes $j,k$	${\sigma }_{agg}$	2

Some variables are shown for context (shaded) but they are not free parameters themselves.