Table 2.
Summary of crystallographic data collection and refinement statistics for PP-InsPs and PCP-InsPs
Data Collection | 5PP-InsP5 | 5PCP-InsP5 | 1,5(PP)2-InsP4 | 1,5(PCP)2-InsP4 |
---|---|---|---|---|
X-ray source | SSRL 12–2 | NSLS II - FMX | SSRL 12–2 | SSRL 12–2 |
Wavelength (Å) | 0.97946 | 0.979358 | 0.97946 | 0.97946 |
Space group | P21212 | P21212 | P21212 | P21212 |
Unit cell dimensions (Å) | a= 169.36, b= 187.00, c= 90.79 |
a= 169.36, b= 187.00, c= 90.79 |
a= 168.90, b= 187.09, c= 90.39 |
a= 168.47, b= 187.23, c= 90.74 |
Resolution (Å) | 50.0–2.6 (2.60–2.76) | 50.0–2.8 (2.80–2.97) | 50.0–3.0 (3.00–3.18) | 50.0–2.7 (2.66–2.82) |
Unique reflections | 88,724 (14,073) | 71,781 (11,401) | 58,102 (9,152) | 83,087 (13,219) |
Multiplicity | 6.70 (6.77) | 8.37 (8.27) | 13.3 (13.0) | 13.6 (13.9) |
Completeness (%) | 99.8 (99.6) | 99.9 (99.6) | 99.7 (98.7) | 99.9 (99.8) |
<I/σI> | 18.16 (0.98) | 14.95 (1.12) | 12.71 (0.69) | 16.07 (0.89) |
Rsym (%) | 8.1 (177.2) | 12.4 (234.0) | 20.4 (362.3) | 14.4 (277.0) |
CC1/2 (%) | 99.9 (61.1) | 99.9 (60.5) | 99.9 (59.6) | 99.9 (53.2) |
Wilson B factor (Å2) | 78.6 | 80.5 | 87.9 | 77.3 |
Refinement | ||||
Resolution (Å) | 49.14–2.60 | 48.47–2.80 | 49.16–3.00 | 49.23–2.66 |
Number of reflections | 84,114 (4,431) | 68,199 (3,573) | 53,859 (2,775) | 78,647 (4,133) |
Rwork/Rfree (%) | 22.2/24.8 | 21.5/24.6 | 21.0/24.5 | 22.0/24.9 |
Number of atoms | 11,759 | 11,548 | 11,777 | 11,750 |
Protein | 11,500 | 11,280 | 11,504 | 11,514 |
InsP | 200 | 240 | 264 | 220 |
Water | 53 | 28 | 9 | 16 |
<B-factor> (Å2) | 93.7 | 101.5 | 113.3 | 93.6 |
Protein | 92.0 | 99.7 | 111.1 | 91.7 |
InsP | 201.1 | 192.7 | 214.5 | 197.5 |
Water | 64.2 | 76.4 | 69.5 | 60.9 |
RMS deviation from ideal | ||||
Bond lengths (Å) | 0.003 | 0.004 | 0.004 | 0.004 |
Bond angles (°) | 0.56 | 1.23 | 1.24 | 1.24 |
Ramachandran plot (% favored/# outliers) | 96.4/0 | 97.7/0 | 94.9/0 | 95.8/0 |
Molprobity score (%) | 100 | 100 | 100 | 100 |
PDB accession code | 7MP0 | 7MOR | 7MP2 | 7MP1 |