TABLE 1.
Genome profiles and AMR results for the four Vibrio strains
| Strain no. | Organism | GenBank accession no. | SRA accession no. | Genome size (Mbp) | No. of reads | Genome coverage (×) | No. of contigs | N50 (bp) | GC content (%) | No. of genes | AMR phenotypea | Plasmid type | Predicted mobility | Plasmid genotype |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ISF-22-6 | V. alginolyticus | JAILXO010000000 | SRR15526828 | 5.2 | 468,108 | 90 | 73 | 343,022 | 44.4 | 4,719 | AMP, SXT, TE, SF, OT (E, KF) | Unknown | Nonmobilizable | CARB-19, tet(35), aph(3″)-Ib, aph(6)-Id, floR, sul2 |
| ISF-208-6 | V. cholerae | JAILXN010000000 | SRR15526827 | 4.4 | 726,913 | 160 | 82 | 206,565 | 47.4 | 4,127 | AMP, CTX, K, S, KF, CTF, PIP, OX, E (ENO) | IncA/C2 | Conjugative | varG, catB9, sul1, aac(6′)-IId, catB3, sul1, mphA, PER3 |
| ISF-232-3 | V. parahaemolyticus | JAILXM010000000 | SRR15526826 | 5.1 | 190,219 | 30 | 161 | 80,238 | 45.3 | 4,639 | AMP, CTX, K, KF, CTF (E) | IncQ1 | Mobilizable | aac(6′)-IIa, ANT(2″)-Ia, VEB-5 |
| ISF-238-3 | V. parahaemolyticus | JAILXL010000000 | SRR15526825 | 5.4 | 592,288 | 465 | 85 | 195,494 | 45.3 | 4,990 | AMP, S, SF, OT (CTF, E, KF) | Unknown | Nonmobilizable | aph(3″)-Ib, aph(6)-Id, floR, sul2 |
a
AMP, ampicillin; CTF, ceftiofur; CTX, cefotaxime; E, erythromycin; ENO, enrofloxacin; K, kanamycin; KF, cephalothin; OT, oxytetracycline; OX, oxolinic acid; PIP, piperacillin; S, streptomycin; SF, sulfafurazole; SXT, sulfamethoxazole-trimethoprim; TE, tetracycline. Abbreviations shown in parentheses refer to intermediate resistance.