TABLE 2.
Median, best replicate, and ensemble performance metrics for each type of cut site and input. The best performance for each column is indicate in bold, i.e. highest PMF or lowest PSE.
| Model | DR5 | DC5 | DC3 | DR3 | ||||
|---|---|---|---|---|---|---|---|---|
| PMF | PSE | PMF | PSE | PMF | PSE | PMF | PSE | |
| Nucleotide sequence only (median) | 0.223 | 4.998 | 0.124 | 5.147 | 0.204 | 4.85 | 0.178 | 4.776 |
| Nucleotide and dot-bracket (median) | 0.37 | 2.657 | 0.297 | 2.962 | 0.39 | 2.385 | 0.321 | 2.385 |
| Nucleotide, and bpRNA (median) | 0.379 | 2.687 | 0.3 | 2.929 | 0.407 | 2.295 | 0.329 | 2.425 |
| Sequence and bpRNA (best replicate) | 0.381 | 2.658 | 0.322 | 3.055 | 0.415 | 2.165 | 0.346 | 2.436 |
| Sequence and bpRNA (ensemble) | 0.45 | 2.426 | 0.354 | 2.819 | 0.47 | 1.994 | 0.389 | 2.037 |