TABLE 2.
Summary of visual opsin genes sequenced or extracted in the current study. Full details, including individual accession numbers can be found on Zenodo (Schott et al., 2022a)
| Species | RH1 | LWS | SWS2 | SWS1 | Sequence source | Reference |
|---|---|---|---|---|---|---|
| Anaxyrus woodhousii | ● | ● | ● | mRNA | This study | |
| Bufo bufo | ● | mRNA | Genbank | |||
| Bufo viridis | a | ● | ● | ● | Transcriptome | Gerchen et al. (2016) |
| Eleutherodactylus cystignathoides | ● | ● | ● | ● | mRNA | This study |
| Gastrophryne carolinensis | ● | ● | ● | ● | mRNA | This study |
| Hyla chrysoscelis | ● | ● | ● | ● | mRNA | This study |
| Hyla cinerea | ● | ● | ● | ● | mRNA | This study |
| Hyla versicolor | ● | ● | ● | ● | mRNA | This study |
| Incilius nebulifer | ● | ● | ● | ● | mRNA | This study |
| Leptobrachium ailaonicum | ● | ● | ● | ● | Genome | Li, Ren, et al. (2019) |
| Leptobrachium leishanense | ● | ● | ● | ● | Genome | Li, Yu, et al. (2019) |
| Limnodynastes dumerilii | ● | ● | ● | ● | Genome | Li et al. (2020) |
| Lithobates catesbeianus | ● | ● | ● | ● | mRNA, Genome | Kayada et al. (1995); Hisatomi et al. (1998); Hisatomi et al. (1999); Hammond et al. (2017) |
| Lithobates clamitans | ● | ● | ● | ● | mRNA | This study |
| Lithobates palustris | ● | ● | ● | ● | mRNA | This study |
| Lithobates pipiens | ● | mRNA | Pittler et al. (1992) | |||
| Lithobates sphenocephalus | ● | ● | ● | ● | Transcriptome | Schott et al. (2021) |
| Rana temporaria | ● | mRNA | Genbank | |||
| Mantella baroni | ● | mRNA | Kojima et al. (2017) | |||
| Mantidactylus betsileanus | ● | ● | ● | Transcriptome | Wollenberg Valero et al. (2017) | |
| Microhyla fissipes | ● | ● | ● | ● | Transcriptome | Zhao et al. (2016) |
| Nanorana parkeri | ● | ● | ● | ● | Genome | Genbank |
| Odorrana margaretae | ● | ● | ● | ● | Transcriptome | Qiao et al. (2013) |
| Pseudacris crucifer | ● | ● | ● | ● | mRNA | This study |
| Pseudacris fouquettei | ● | ● | ● | mRNA | This study | |
| Pyxicephalus adspersus | ● | ● | ● | ● | Genome | Denton et al. (2018) |
| Rhinella marina | ● | ● | ● | ● | mRNA, Genome | Edwards et al. (2018) |
| Scaphiopus holbrookii | ● | ● | ● | ● | Genome | Seidl et al. (2019) |
| Scaphiopus hurterii | ● | ● | mRNA | This study | ||
| Spea bombifrons | ● | ● | ● | ● | Genome | Seidl et al. (2019) |
| Spea multiplicata | ● | ● | ● | ● | Genome | Seidl et al. (2019) |
| Xenopus laevis | ● | ● | ● | ● | mRNA, Genome | Session et al. (2016) |
| Xenopus tropicalis | ● | ● | ● | ● | Genome | Hellsten et al. (2010) |
a
Partial sequence was recovered but not used in analyses.