TABLE 6.
Opsin amino acid sites inferred to be under positive selection with at least 80% posterior probability by either the BEB analyses of M8 model or with FUBAR. Sites numbers are relative to those in bovine RH1. Full PAML and FUBAR results tables can be found on Zenodo (Schott et al., 2022a)
| Opsin | Site number | PAML M8 BEB | FUBAR | ||
|---|---|---|---|---|---|
| Posterior probability | ω | Posterior probability | ω | ||
| RH1 | 39 | 0.988 | 1.498 ± 0.106 | 0.791 | 3.272 |
| RH1 | 65 | – | – | 0.865 | 3.005 |
| RH1 | 97 | – | – | 0.862 | 2.777 |
| RH1 | 107 | 0.979 | 1.192 ± 0.124 | 0.019 | 0.399 |
| RH1 | 112 | – | – | 0.92 | 4.158 |
| RH1 | 169 | 0.753 | 1.314 ± 0.339 | 0.987 | 8.027 |
| RH1 | 213 | 0.964 | 1.482 ± 0.145 | 0.94 | 5.555 |
| RH1 | 270 | 0.842 | 1.387 ± 0.283 | 0.15 | 0.878 |
| RH1 | 277 | – | – | 0.885 | 3.475 |
| LWS | 49 | 0.995 | 1.524 ± 0.238 | 0.917 | 6.790 |
| LWS | 154 | 0.551 | 1.153 ± 0.401 | 0.918 | 4.358 |
| LWS | 166 | – | – | 0.864 | 2.830 |
| LWS | 217 | 0.898 | 1.442 ± 0.254 | 0.543 | 2.240 |
| LWS | 49 | – | – | 0.917 | 6.790 |
| LWS | 154 | – | – | 0.918 | 4.358 |
| LWS | 166 | 0.864 | 2.830258 | 0.864 | 2.830 |
| SWS1 | 120 | – | – | 0.909 | 7.280 |
| SWS1 | 159 | – | – | 0.906 | 3.560 |
| SWS2 | −2 | – | – | 0.901 | 7.194 |