Table 3.
Model | Rank | CHR | SNP | Position | P | Related gene | Genotype (patients) |
Genotype (controls) |
||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
A/A | A/B | B/B | A/A | A/B | B/B | |||||||
Trend | 1 | 13 | rs4773840 | 94568426 | 0.0000001638* | ABCC4 | 16 | 40 | 33 | 10 | 96 | 176 |
Trend | 2 | 13 | rs1678353 | 94547567 | 0.000000255 | ABCC4 | 17 | 39 | 33 | 9 | 103 | 170 |
Trend | 3 | 13 | rs1751057 | 94548737 | 0.0000003913 | ABCC4 | 17 | 39 | 33 | 10 | 102 | 170 |
Trend | 4 | 13 | rs1678395 | 94563955 | 0.000001063 | ABCC4 | 16 | 40 | 33 | 11 | 101 | 170 |
Trend | 5 | 13 | rs1678362 | 94529692 | 0.000001482 | ABCC4 | 16 | 41 | 32 | 12 | 103 | 167 |
Trend | 5 | 13 | rs1751052 | 94531379 | 0.000001482 | ABCC4 | 16 | 41 | 32 | 12 | 103 | 167 |
Trend | 5 | 13 | rs1189438 | 94532991 | 0.000001482 | ABCC4 | 16 | 41 | 32 | 12 | 103 | 167 |
Trend | 8 | 9 | rs10114508 | 26892593 | 0.000002803 | 5 | 36 | 46 | 2 | 63 | 214 | |
Trend | 9 | 13 | rs1729752 | 94530363 | 0.000004509 | ABCC4 | 18 | 39 | 32 | 14 | 108 | 160 |
Trend | 10 | 13 | rs4148540 | 94491368 | 0.000005799 | ABCC4 | 13 | 45 | 31 | 16 | 94 | 172 |
Trend | 10 | 13 | rs4148540 | 94491368 | 0.000005799 | ABCC4 | 4 | 42 | 43 | 66 | 136 | 80 |
Trend | 12 | 18 | rs12458523 | 19074726 | 0.00000617 | CABLES1 | 11 | 43 | 35 | 14 | 82 | 186 |
Trend | 13 | 14 | rs2167151 | 78933086 | 0.000006287 | NRXN3 | 6 | 44 | 39 | 6 | 80 | 196 |
Trend | 14 | 12 | rs10851014 | 117614600 | 0.0000063 | 16 | 39 | 34 | 12 | 105 | 165 | |
Trend | 15 | 13 | rs1678387 | 94515907 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Trend | 15 | 13 | rs1678365 | 94516981 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Trend | 15 | 13 | rs1189451 | 94520087 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Trend | 15 | 13 | rs2619312 | 94521040 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Trend | 15 | 13 | rs1751037 | 94521559 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Trend | 15 | 13 | rs1189461 | 94521789 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Trend | 15 | 13 | rs1189464 | 94523867 | 0.000009474 | ABCC4 | 16 | 39 | 34 | 12 | 105 | 165 |
Dominant | 1 | 6 | rs4075048 | 19275975 | 0.00001134 | 0 | 4 | 85 | 4 | 65 | 213 | |
Dominant | 2 | 14 | rs2167151 | 78933086 | 0.00001212 | NRXN3 | 11 | 43 | 35 | 14 | 82 | 186 |
Dominant | 3 | 2 | rs6718476 | 6112647 | 0.00001274 | 11 | 38 | 40 | 59 | 166 | 57 | |
Dominant | 3 | 2 | rs2693818 | 6121959 | 0.00001274 | 11 | 38 | 40 | 59 | 166 | 57 | |
Dominant | 5 | 13 | rs4148540 | 94491368 | 0.00001754 | ABCC4 | 13 | 45 | 31 | 16 | 94 | 172 |
Dominant | 6 | 6 | rs9368038 | 19298240 | 0.00001905 | 0 | 5 | 84 | 5 | 66 | 211 | |
Dominant | 6 | 6 | rs9350106 | 19303045 | 0.00001905 | 0 | 5 | 84 | 5 | 66 | 211 | |
Dominant | 8 | 12 | rs10851014 | 117614600 | 0.00002548 | 6 | 44 | 39 | 6 | 80 | 196 | |
Dominant | 9 | 2 | rs4675047 | 226665422 | 0.00002799 | 3 | 24 | 62 | 29 | 125 | 119 | |
Dominant | 10 | 1 | rs2176360 | 188083580 | 0.00002889 | 9 | 50 | 30 | 14 | 100 | 168 | |
Dominant | 11 | 7 | rs4722067 | 21868091 | 0.00003014 | DNAH11 | 16 | 33 | 40 | 82 | 140 | 60 |
Dominant | 12 | 16 | rs12596324 | 26039779 | 0.00003039 | HS3ST4 | 10 | 29 | 50 | 44 | 150 | 88 |
Dominant | 13 | 6 | rs9358193 | 19281466 | 0.0000309 | 0 | 5 | 84 | 5 | 64 | 211 | |
Dominant | 14 | 6 | rs648248 | 117187750 | 0.00003254 | FAM162B | 13 | 30 | 46 | 48 | 157 | 77 |
Dominant | 15 | 9 | rs10114508 | 26892593 | 0.00003959 | 5 | 36 | 46 | 2 | 63 | 214 | |
Dominant | 16 | 13 | rs4773840 | 94568426 | 0.00004453 | ABCC4 | 16 | 40 | 33 | 10 | 96 | 176 |
Dominant | 17 | 8 | rs7822451 | 17266781 | 0.00004517 | MTMR7 | 5 | 29 | 55 | 35 | 143 | 104 |
Dominant | 18 | 7 | rs10278297 | 135341940 | 0.00004885 | 15 | 33 | 41 | 49 | 168 | 65 | |
Dominant | 19 | 1 | rs624912 | 236807876 | 0.00005329 | 7 | 21 | 61 | 32 | 126 | 123 | |
Dominant | 20 | 8 | rs2658914 | 56511974 | 0.00005364 | XKR4 | 0 | 18 | 71 | 13 | 111 | 158 |
Recessive | 1 | 13 | rs1678353 | 94547567 | 0.00000369 | ABCC4 | 17 | 39 | 33 | 9 | 103 | 170 |
Recessive | 2 | 13 | rs1751057 | 94548737 | 0.000008018 | ABCC4 | 17 | 39 | 33 | 10 | 102 | 170 |
Recessive | 3 | 18 | rs12458523 | 19074726 | 0.00001884 | CABLES1 | 4 | 42 | 43 | 66 | 136 | 80 |
Recessive | 4 | 13 | rs4773840 | 94568426 | 0.00002414 | ABCC4 | 16 | 40 | 33 | 10 | 96 | 176 |
Recessive | 5 | 12 | rs10849659 | 118331044 | 0.00002555 | CCDC60 | 19 | 28 | 42 | 15 | 132 | 135 |
Recessive | 6 | 13 | rs1729752 | 94530363 | 0.00003901 | ABCC4 | 18 | 39 | 32 | 14 | 108 | 160 |
Recessive | 7 | 2 | rs10208470 | 75356624 | 0.00004381 | 2 | 49 | 38 | 52 | 122 | 108 | |
Recessive | 8 | 2 | rs10205827 | 75356361 | 0.00004401 | 2 | 49 | 38 | 52 | 122 | 107 | |
Recessive | 9 | 12 | rs4465416 | 118338125 | 0.00004502 | CCDC60 | 19 | 28 | 42 | 16 | 131 | 135 |
Recessive | 10 | 13 | rs9576139 | 36396944 | 0.00004547 | 0 | 37 | 52 | 36 | 108 | 138 | |
Recessive | 11 | 13 | rs1678395 | 94563955 | 0.0000476 | ABCC4 | 16 | 40 | 33 | 11 | 101 | 170 |
Recessive | 12 | 12 | rs4300442 | 118324515 | 0.00005037 | CCDC60 | 20 | 29 | 40 | 17 | 131 | 134 |
Recessive | 13 | 2 | rs1015802 | 153792446 | 0.00005759 | 8 | 20 | 60 | 1 | 77 | 204 | |
Recessive | 14 | 2 | rs11680628 | 153839089 | 0.00006176 | 8 | 20 | 61 | 1 | 75 | 206 | |
Recessive | 15 | 2 | rs1439630 | 153839620 | 0.00006204 | 10 | 24 | 55 | 3 | 82 | 197 | |
Recessive | 15 | 2 | rs7556698 | 153850240 | 0.00006204 | 10 | 24 | 55 | 3 | 81 | 198 | |
Recessive | 17 | 9 | rs10981230 | 113851385 | 0.00007136 | MIR3134,SUSD1 | 35 | 38 | 16 | 50 | 152 | 80 |
Recessive | 18 | 13 | rs9557470 | 100094751 | 0.00007228 | TMTC4 | 23 | 31 | 35 | 24 | 130 | 128 |
Recessive | 19 | 1 | rs4129058 | 5310402 | 0.00007338 | 2 | 59 | 28 | 50 | 131 | 101 | |
Recessive | 20 | 4 | rs7670109 | 184691188 | 0.00008034 | 35 | 37 | 17 | 51 | 157 | 74 |
Model, the genetic model in which candidate SNPs were selected by GWAS; CHR, chromosome number.Related gene, the nearest gene from the SNP site; A/A, homozygote for the minor allele in each SNP.A/B, heterozygote for the major allele in each SNP; B/B, homozygote for the major allele in each SNP.*, Significant association after correction for multiple testing.