Table 2.
Overview and details used for phylogenetic analyses in sections of Penicillium analysed in this study.
| Dataset | Sections | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chrysogena | Robsamsonia | Paradoxa/Turbata | Canescentia | Exilicaulis | Lan.-Div. | Gracilenta | Citrina | ||
| tub2 | Length (bp) | 499 | 468 | 493 | 431 | 503 | 547 | 508 | 470 |
| tub2 | Pvar | 113 | 171 | 173 | 161 | 254 | 307 | 189 | 240 |
| tub2 | Pi | 65 | 103 | 108 | 101 | 205 | 257 | 93 | 207 |
| tub2 | Model* | K2+G | K2+G | K2+G | K2+G | HKY+G+I | HKY+G+I | HKY+G | HKY+G+I |
| tub2 | Model** | K2+G | K2+G | K2+G | K2+G | K2+G | K2+G+I | TN93+G | K2+G |
| cmdA | Length (bp) | 531 | 542 | 529 | 560 | 604 | 626 | 642 | 626 |
| cmdA | Pvar | 177 | 202 | 221 | 189 | 302 | 392 | 264 | 378 |
| cmdA | Pi | 93 | 124 | 136 | 95 | 349 | 329 | 145 | 337 |
| cmdA | Model* | K2+G | K2+I | SYM+G | K2+G | SYM+G+I | HKY+G+I | K2+I | SYM+G+I |
| cmdA | Model** | K2+G | K2+G | K2+I | K2+G | K2+G+I | K2+G+I | K2+I | K2+G+I |
| ITS | Length (bp) | 580 | 605 | 572 | 610 | 576 | 559 | 566 | 566 |
| ITS | Pvar | 25 | 60 | 39 | 45 | 102 | 180 | 44 | 119 |
| ITS | Pi | 7 | 17 | 21 | 33 | 60 | 154 | 20 | 99 |
| ITS | Model* | K2+G | K2+G | K2+I | K2 | K2+G+I | GTR+G+I | GTR+I | GTR+G+I |
| ITS | Model** | T92 | JC+G | K2+I | T92 | K2+G+I | GTR+G+I | T92+I | K2+G+I |
| rpb2 | Length (bp) | - | 936 | 929 | 915 | 950 | 837 | 978 | - |
| rpb2 | Pvar | - | 249 | 256 | 230 | 360 | 345 | 294 | - |
| rpb2 | Pi | - | 176 | 183 | 121 | 306 | 313 | 113 | - |
| rpb2 | Model* | - | SYM+G | SYM+G | K2+G | SYM+G+I | GTR+G+I | SYM+G | - |
| rpb2 | Model** | - | K2+G | K2+I | K2+G | K2+G+I | K2+G+I | TN93+G | - |
| Concatenated | Length (bp) | 1610 | 2551 | 2523 | 2516 | 2633 | 2569 | 2694 | 1662 |
| Concatenated | Pvar | 315 | 628 | 689 | 625 | 1018 | 1224 | 791 | 737 |
| Concatenated | Pi | 165 | 420 | 448 | 350 | 820 | 1053 | 371 | 643 |
| Concatenated | Model* | K2+G+I | SYM+G | SYM+G | K2+G+I | HKY+G+I | GTR+G+I | GTR+G | SYM+G+I |
| Concatenated | Model** | K2+G | K2+G | K2+G | K2+G | K2+G+I | GTR+G+I | K2+I | K2+G |
Lan.-Div. = sect.Lanata-Divaricata; Pvar = variable sites; Pi = phylogenetic informative sites; *= substitution model for Bayesian inference; **= substitution model for ML analysis; K2 = Kimura 2-parameter; HKY = Hasegawa-Kishino-Yano; SYM = Symmetrical; GTR = General Time Reversible; TN93 = Tamura-Nei; T92 = Tamura 3-parameter; JC = Jukes-Cantor; G = Gamma Distributed; I = Invariant Sites.