KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Bacterial and virus strains
T4-like Vibrio phage 2.275.O._10N.286.54.E11	Martin Polz Lab	MG592671.1
Vibrio cyclitrophicus, strain 10N.286.54.E11	Martin Polz Lab	NZ_MCTE00000000.1
Critical commercial assays
Ribo-Zero Bacteria kit (gram negative and positive)	Illumina	discontinued
Kapa Hyperprep	Roche	KK8504
Pippin Prep	Sage Science	No catalog #
RNA Clean & Concentrator	Zymo Research	R1080
TGIRTTM-III enzyme	InGex	TGIRT50
RNA Ligase 2, truncated KQ	New England Biolabs	M0373S
5´ DNA Adenylation Kit	New England Biolabs	E2610L
Oligo Clean & Concentrator	Zymo Research	D4060
KAPA SYBR FAST	Roche	KK4600
MinElute PCR Purification Kit	Qiagen	28004
Deposited data
tRNA-seq	Raw sequencing reads	PRJNA524872
RNA-seq	Raw sequencing reads	PRJNA524877
Oligonucleotides
3’ preadenylated adapter AppNNNNAGATCGGAAGAGCACACGTCT/iBiodT/iBiodT/3ddC/	This paper	N/A
qPCR primers, GroEL, host genome: CAATGGATCTTAAGCGCGGC and CAGAGATAACCGTACCGCCC	This paper	Genbank locus tag BCV12_01410
qPCR primers, CTP synthetase, host genome: CTTTGGCGATCGTGGTGTTG and TTTTCTAATTCGCCGCGCTG	This paper	Genbank locus tag BCV12_03025
qPCR primers, GroEL, phage genome: CTTTGAAGACATGGGCGCAC and AACGACTAGGGTTGCAAGCA	This paper	Genbank locus tag NVP2275O_355
qPCR primers, Major Capsid Protein, phage genome: TGAAGGTGTTATGGGTCGCC and ATACGGGCAGTAGAACGCAG	This paper	NVP2275O_445
preadenylated DNA adapter AppNNNNGATCGTCGGACTGTAGAACTCTGA/3ddC/	This paper	N/A
Sequencing primer AATGATACGGCGACCACCGAGATCTACACGTTCAGAGTTCTACAGTCCGACGATC	This paper	N/A
Sequencing primer CAAGCAGAAGACGGCATACGAGATBBBBBBGTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT (BBBBBB indicates barcode sequence)	This paper	N/A
Software and algorithms
LocaRNA	Will S, Reiche K, Hofacker IL, et al. (2007)	http://www.bioinf.uni-freiburg.de/Software/LocARNA/
tRNAscan-SE	Lowe TM, Eddy SR (1997)	http://lowelab.ucsc.edu/tRNAscan-SE/
Aragorn	Laslett D, Canback B (2004)	http://lowelab.ucsc.edu/tRNAscan-SE/
MUSCLE	Edgar RC (2004)	https://www.drive5.com/muscle/