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Software Used in Our Benchmark.
| Method | Type | Infers Root | Ref. |
|---|---|---|---|
| NJst | Distance matrix | No | Liu and Yu (2011) |
| DupTree | Parsimony | Yes | Wehe et al. (2008) |
| FastMulRFS | Distance to GFTs | No | Molloy and Warnow (2020) |
| ASTRAL-Pro | Quartet | No | Zhang et al. (2020) |
| PHYLDOG | Maximum likelihood | Yes | Boussau et al. (2012) |
| MiniNJ | Distance matrix | No | This study |
| SpeciesRax | Maximum likelihood | Yes | This study |
