Table 2.
Allele frequency and genotype frequency of 30 SNP loci.
| Loci | Guide dog | Sniffer | Collective | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Allele frequency | Genotype frequency | Allele frequency | Genotype frequency | Allele frequency | Genotype frequency | ||||||||||||
| OR0006:c.524 G > T ∗ | G/0.980 | T/0.020 | GG/0.959 | GT/0.041 | G/0.942 | T/0.058 | GG/0.884 | GT/0.116 | G/0.962 | T/0.038 | GG/0.924 | GT/0.076 | |||||
| OR0007:c.331 T >C | T/0.878 | C/0.122 | TT/0.755 | TC/0.245 | T/0.709 | C/0.291 | TT/0.419 | TC/0.581 | T/0.799 | C/0.201 | TT/0.598 | TC/0.402 | |||||
| OR0007:c.430 G > A | A/0.796 | G/0.204 | AA/0.592 | GA/0.408 | A/0.942 | G/0.058 | AA/0.884 | GA/0.116 | A/0.864 | G/0.136 | AA/0.728 | GA/0.272 | |||||
| OR0007:c.508 G > A ∗ | G/1 | GG/1 | G/0.907 | A/0.093 | GG/0.814 | GA/0.186 | G/0.957 | A/0.043 | GG/0.913 | GA/0.087 | |||||||
| OR0007:c.691 G > C | G/0.663 | C/0.337 | GG/0.408 | GC/0.510 | CC/0.082 | G/0.628 | C/0.372 | GG/0.256 | GC/0.744 | G/0.647 | C/0.353 | GG/0.337 | GC/0.620 | CC/0.043 | |||
| OR0007:c.730 T >C | C/0.878 | T/0.122 | CC/0.755 | CT/0.245 | C/1 | CC/1 | C/0.935 | T/0.065 | CC/0.870 | CT/0.130 | |||||||
| OR0007:c.793 G > C | C/0.837 | G/0.163 | CC/0.673 | CG/0.327 | C/0.942 | G/0.058 | CC/0.884 | CG/0.116 | C/0.886 | G/0.114 | CC/0.772 | CG/0.228 | |||||
| OR0007:c.829 C >T | C/0.541 | T/0.459 | CC/0.082 | TC/0.918 | C/0.5 | T/0.5 | TC/1 | C/0.522 | T/0.478 | CC/0.043 | TC/0.957 | ||||||
| OR0007:c.830 C >T | C/0.837 | T/0.163 | TT/0.755 | TC/0.163 | CC/0.082 | T/1 | TT/1 | C/0.087 | T/0.913 | TT/0.870 | TC/0.087 | CC/0.043 | |||||
| OR16C11:c.294 G > A ∗ | G/0.929 | A/0.071 | GG/0.857 | GA/0.143 | G/0.884 | A/0.116 | GG/0.767 | GA/0.233 | G/0.908 | A/0.092 | GG/0.815 | GA/0.185 | |||||
| OR16C11:c.368 C >A | C/1 | CC/1 | C/0.953 | A/0.047 | CC/0.907 | CA/0.093 | C/0.978 | A/0.022 | CC/0.957 | CA/0.043 | |||||||
| OR16C11:c.391 A >G | A/0.969 | G/0.031 | AA/0.939 | GA/0.061 | A/1 | AA/1 | A/0.984 | G/0.016 | AA/0.967 | GA/0.033 | |||||||
| OR16C11:c.632del | NONE | NONE | NONE | NONE | |||||||||||||
| DOPRX09:c.479 G > A | G/0.5 | A/0.5 | GA/1 | G/0.5 | A/0.5 | GA/1 | G/0.5 | A/0.5 | GA/1 | ||||||||
| DOPRX09:c.481 T >G | T/0.5 | G/0.5 | TG/1 | T/0.5 | G/0.5 | TG/1 | T/0.5 | G/0.5 | TG/1 | ||||||||
| DOPRX09:c.486 T > G | G/0.541 | T/0.459 | GG/0.082 | GT/0.918 | G/0.698 | T/0.302 | GG/0.395 | GT/0.605 | G/0.614 | T/0.386 | GG/0.228 | GT/0.772 | |||||
| DOPRX09:c.889 G > A∗ | G/0.102 | A/0.898 | GG/0.796 | GA/0.204 | G/1 | GG/1 | G/0.946 | A/0.054 | GG/0.891 | GA/0.109 | |||||||
| OR08G02:c.756 G > T ∗ | G/1 | GG/1 | G/1 | GG/1 | G/1 | GG/1 | |||||||||||
| OR7215:c.251 C >T | C/0.163 | T/0.837 | CC/0.163 | TT/0.837 | C/0.605 | T/0.395 | CC/0.605 | TT/0.395 | T/0.370 | T/0.630 | CC/0.370 | TT/0.630 | |||||
| OR7215:c.272ins | None | None | None | ||||||||||||||
| OR7215:c.273ins | CTTCCA/1 | CTTCCA/1 | CTTCCA/1 | CTTCCA/1 | CTTCCA/1 | CTTCCA/1 | |||||||||||
| OR7215:c.286 G > A | G/1 | GG/1 | G/1 | GG/1 | G/1 | GG/1 | |||||||||||
| OR7215:c.299 A >G | G/1 | GG/1 | G/1 | GG/1 | G/1 | GG/1 | |||||||||||
| OR7215:c.339 G > A | G/1 | GG/1 | G/1 | GG/1 | G/1 | GG/1 | |||||||||||
| OR7215:c.398del | None | None | None | ||||||||||||||
| OR7215:c.413 G > A ∗ | G/1 | GG/1 | G/1 | GG/1 | G/1 | GG/1 | |||||||||||
| OR7215:c.578 A >T ∗ | A/1 | AA/1 | A/0.838 | T/0.162 | AA/0.838 | TT/0.162 | A/0.924 | T/0.076 | AA/0.924 | T T/0.076 | |||||||
| OR04B06:c.215 T >G | T/1 | TT/1 | T/1 | TT/1 | T/1 | TT/1 | |||||||||||
| OR04B06:c.394 A >G | G/1 | GG/1 | G/1 | GG/1 | G/1 | GG/1 | |||||||||||
| OR04B06:c.411 A >T | T/1 | TT/1 | T/1 | TT/1 | T/1 | TT/1 | |||||||||||
∗Asterisks marked out the breed-specific SNPs. No asterisks meant that the SNPs could be found in other dog breeds besides Labs.