Table 5.
Genetic polymorphism and HWE analysis of the collective and working dog subpopulations.
Loci | Ho | He | PIC | HWE | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Guide | Sniffer | Collective | Guide | Sniffer | Collective | Guide | Sniffer | Collective | Guide | Sniffer | Collective | |
OR0006:c.524 G > T∗ | 0.041 | 0.116 | 0.076 | 0.039 | 0.109 | 0.073 | 0.038 | 0.103 | 0.070 | 0.884 | 0.686 | 0.704 |
OR0007:c.331 T > C | 0.245 | 0.581 | 0.402 | 0.214 | 0.413 | 0.321 | 0.191 | 0.328 | 0.270 | 0.329 | 0.007 | 0.016 |
OR0007:c.430 G > A | 0.408 | 0.116 | 0.272 | 0.325 | 0.109 | 0.235 | 0.272 | 0.103 | 0.207 | 0.073 | 0.686 | 0.132 |
OR0007:c.508 G > A∗ | 0 | 0.186 | 0.087 | 0 | 0.169 | 0.082 | 0 | 0.154 | 0.079 | — | 0.501 | 0.663 |
OR0007:c.691 G > C | 0.510 | 0.744 | 0.620 | 0.447 | 0.467 | 0.457 | 0.347 | 0.358 | 0.352 | 0.320 | 1E − 04 | 6E − 04 |
OR0007:c.730 T > C | 0.245 | 0 | 0.130 | 0.225 | 0 | 0.122 | 0.191 | 0 | 0.114 | 0.329 | — | 0.503 |
OR0007:c.793 G > C | 0.327 | 0.116 | 0.228 | 0.273 | 0.109 | 0.202 | 0.236 | 0.103 | 0.182 | 0.172 | 0.686 | 0.217 |
OR0007:c.829 C > T | 0.918 | 0 | 0.957 | 0.497 | 0 | 0.499 | 0.373 | 0.375 | 0.375 | 3E − 09 | 5E − 11 | 1E − 18 |
OR0007:c.830 C > T | 0.163 | 0 | 0.087 | 0.273 | 0 | 0.159 | 0.236 | 0 | 0.146 | 0.005 | — | 1E − 05 |
OR16C11:c.294 G > A∗ | 0.143 | 0.233 | 0.185 | 0.132 | 0.205 | 0.167 | 0.123 | 0.184 | 0.153 | 0.590 | 0.388 | 0.329 |
OR16C11:c.368 C > A | 0 | 0.093 | 0.043 | 0 | 0.090 | 0.043 | 0 | 0.086 | 0.042 | — | 0.749 | 0.831 |
OR16C11:c.391 A > G | 0.061 | 0 | 0.033 | 0.060 | 0 | 0.031 | 0.058 | 0 | 0.031 | 0.825 | — | 0.874 |
DOPRX09:c.479 G > A | 1 | 1 | 1 | 0.5 | 0.5 | 0.5 | 0.375 | 0.375 | 0.375 | 3E − 12 | 5E − 11 | 9E − 22 |
DOPRX09:c.481 T > G | 1 | 1 | 1 | 0.5 | 0.5 | 0.5 | 0.375 | 0.375 | 0.375 | 3E − 12 | 5E − 11 | 9E − 22 |
DOPRX09:c.486 T > G | 0.918 | 0.605 | 0.772 | 0.497 | 0.422 | 0.474 | 0.373 | 0.333 | 0.362 | 3E − 09 | 0.004 | 2E − 09 |
DOPRX09:c.889 G > A∗ | 0.204 | 0 | 0.109 | 0.183 | 0 | 0.102 | 0.166 | 0 | 0.097 | 0.426 | — | 0.581 |
OR7215:c.251-C > T | 0 | 0 | 0 | 0.273 | 0.472 | 0.466 | 0.236 | 0.360 | 0.358 | 3E − 12 | 5E − 11 | 9E − 22 |
OR7215:c.578-A > T∗ | 0 | 0 | 0 | 0 | 0.273 | 0.140 | 0 | 0.236 | 0.131 | — | 5E − 11 | 9E − 22 |
Asterisks marked out the breed-specific SNPs. No asterisks meant that the SNPs could be found in other dog breeds besides Labs. Observed heterozygosity (Ho), expected heterozygosity (He), polymorphism information content (PIC), and Hardy–Weinberg equilibrium (HWE) values.