Table 2.
Primer designed for whole-genome sequencing.
| Primer name | Primer sequence (5’→3’) | Size | Position |
|---|---|---|---|
| IBDV-A-FB1 | GGATACGATCGGTCTGACCCC | 21 | 1-21 |
| IBDV-A-R246 | GAACTTGTAGTTCCCATTGCTCTG | 24 | 223-246 |
| IBDV-A-F116 | GGTCAGAGACCTCGACCTACAAT | 23 | 116-138 |
| IBDV-A_R728 | CCAACGCTGAGACTTGTGATGG | 22 | 707-728 |
| IBDVP2_F658 | TACCAATTCTCATCACAGTACCAA | 24 | 658-682 |
| IBDVP2_R1039 | CGGAGGGCCCCTGGATAGTT | 20 | 1039-1049 |
| IBDV-A_F976 | TCATGGTCAGCAAGTGGGAGC | 21 | 976-996 |
| IBDV-A-R1499 | GGGAACAATGTGGAGACCACCG | 22 | 1500-1521 |
| IBDV-A-F1431 | CTCCCCTGAAGATTGCAGGAGC | 22 | 1431-1452 |
| IBDV-A_R1846 | CCCCATCTGGAGCATATCCATA | 22 | 1825-1846 |
| IBDV-A_F1792 | TCCTTCATACGAACTCTCTCCG | 22 | 1792-1813 |
| IBDV-A_R2590 | CCTCCATCTTCTTTGAGATCCG | 22 | 2569-2590 |
| IBDV-A_F2504 | AGCAGGCTACGGAGTGGAGG | 20 | 2505-2524 |
| IBDV-A_R3137 | TACCAAGGGGACCCGCGAAC | 20 | 3117-3136 |
| IBDV-B_F01 | GGATACGATGGGTCTGACCCT | 21 | 3-23 |
| IBDV-B-R520 | CTTCCGGAAGCTGGAGAAATAG | 22 | 520-541 |
| IBDV-B-F410 | CCATTGGTGACCAAGAGTACTTCC | 24 | 410-433 |
| IBDV-B_R921 | TTTCTCCTTTGGTGCGACCAAC | 22 | 898-921 |
| IBDV-B_F875 | CAAGTCATCAAGTGGACTGCCC | 22 | 875-896 |
| IBDV-B-R1387 | CCGCCTGCATGTGTTGACG | 19 | 1387-1405 |
| IBDV-B-F1357 | GACCTAGAGAAGGGGGAGGC | 20 | 1357-1376 |
| IBDV-B-R2344 | CTTTGGCCTTTACTGCATCTTG | 22 | 2344-2365 |
| IBDV-B-F2286 | CAGGAATGAAGCCGGACTGAGTGG | 24 | 2286-2309 |
IBDV=Infectious bursal disease virus