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. 2022 Jan 12;11:e73577. doi: 10.7554/eLife.73577

Figure 5. The impact of individual filters on the estimated rate of a trio of rhesus macaques.

Figure 5.

The default filters used by Lucie Bergeron (LB) pipeline were DP < 0.5 × depth individual; DP > 2 × depthindividual; GQ < 60; AB < 0.3; AB > 0.7, no AD filter.

Figure 5—source data 1. Details on the number of candidate DNMs, the number of false positive calls, the size of the callable genome, the false negative rate and the final estimated mutation rate using various individual filters.