Table 1.

Comparison between HiCmapTools and other current tools applied to HiC sequencing datasets

Function	HiCmapTools	HiCPro [7]	Juicer [8], Juicebox [9]	gcMapExplorer [10]
Generate HiC map	x	o	o	x
Visualization	x	x	o	o
Format transformation	x	o	o	o
Extra submap	o	x	dump	x
Query HiC map	o	MAKE_VIEWPOINTS.PY*	x	x

^*Generates a BED profile from a specified viewpoint (similar to the -bait query mode of HicmapTools)