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. 2022 Jan 28;13:806429. doi: 10.3389/fgene.2022.806429

TABLE 3.

Rare co-segregating variants in family members.

Gene Genomic postion RefSNP Transcript AA change Type Consequence MAF Prediction
GnomAD D2K CADD SIFT GERP
CACNA1A 19:13346442C > T NA ENST00000360228 p.V1686M SNV Missense 0 0 28 D 5.0
CD163L1 12:7521563TGA > T rs781351459 ENST00000539726 S1RfsX64 DEL Frameshift 0.3526 0 7.034 NA NA
OR8U1 11:56143415A > G NA ENST00000302270 p.T106A SNV Missense 0 0 0.001 T −7.1

RefSNP, Reference single-nucleotide polymorphism; AA, Amino acid; SNV, Singe nucleotide variant; DEL, Deletion; MAF, Minor allele frequency. GnomAD, Genome Aggregation Database. D2K = 2000 Danish Exomes. CADD, Combined Annotation Dependent Depletion(15). SIFT, Sorting Intolerant from Tolerant(16). D = Deleterious. T = Tolerated. GERP, Genomic Evolutionary Rate Profiling Score (17).