TABLE 3.
Gene | Genomic postion | RefSNP | Transcript | AA change | Type | Consequence | MAF | Prediction | |||
---|---|---|---|---|---|---|---|---|---|---|---|
GnomAD | D2K | CADD | SIFT | GERP | |||||||
CACNA1A | 19:13346442C > T | NA | ENST00000360228 | p.V1686M | SNV | Missense | 0 | 0 | 28 | D | 5.0 |
CD163L1 | 12:7521563TGA > T | rs781351459 | ENST00000539726 | S1RfsX64 | DEL | Frameshift | 0.3526 | 0 | 7.034 | NA | NA |
OR8U1 | 11:56143415A > G | NA | ENST00000302270 | p.T106A | SNV | Missense | 0 | 0 | 0.001 | T | −7.1 |
RefSNP, Reference single-nucleotide polymorphism; AA, Amino acid; SNV, Singe nucleotide variant; DEL, Deletion; MAF, Minor allele frequency. GnomAD, Genome Aggregation Database. D2K = 2000 Danish Exomes. CADD, Combined Annotation Dependent Depletion(15). SIFT, Sorting Intolerant from Tolerant(16). D = Deleterious. T = Tolerated. GERP, Genomic Evolutionary Rate Profiling Score (17).