Table 1.
Repository Name | Web Link | Data Available |
---|---|---|
The Cancer Genome Atlas (TCGA) [34] | https://cancergenome.nih.gov (accessed on 1 December 2021) | RNA-Seq, DNA-Seq, miRNA-Seq, DNA methylation, SNV, CNV, RPPA |
Clinical Proteomic Tumor Analysis Consortium (CPTAC) [35] | https://cptac-data-portal.georgetown.edu (accessed on 1 December 2021) | proteomics data corresponding to the TCGA samples |
Cancer Cell Line Encyclopedia (CCLE) [36] | https://portals.broadinstitute.org/ccle (accessed on 1 December 2021) | gene expression, drug sensitivity data, WGS, histone profiling, RNA-Seq, DNA methylation, miRNA profiling, metabolite profiling, RPPA |
SNV, single-nucleotide variant; CNV, copy number variation; RPPA, reverse phase protein array.