Table 1.

Current omics data available from DM1 studies.

Technique	Type	Sample	Species	Objective	Reference	Cite
CLIP-Seq	Illumina Genome Analyzer II	Embryonic fibroblasts	Human, mouse	Alternative polyadenylation	GSE60487	[9]
2D WB and nano LC-MS/MS	MALDI-TOF Voyager -DE-STR and Q-TOF MS	Frontal cortex and hippocampus	Mouse	Proteome and phosphoproteome analysis	Not provided	[26]
Microarray	ares_ucsc_mouse_59198_affyMouseA	Skeletal muscle biopsies	Mouse	Alternative splicing	GSE17986	[36]
RNA-Seq	Illumina HiSeq 2000	Brain, heart, skeletal muscle, and cell cultures	Mouse	Transcriptome analysis	GSE39911	[38]
CLIP-Seq	Illumina Genome Analyzer II	Brain, heart, skeletal muscle, and cell cultures	Mouse	RBP binding sites	GSE39911	[38]
RNA-Seq	Illumina HiSeq 2500	Quadriceps	Mouse	Transcriptome analysis	PRJNA625451	[40]
RNA-Seq	Illumina NextSeq 500	Embryonic stem cells, myoblast, myotubes	Human	Transcriptome analysis	GSE160916	[41]
RNA-Seq	Illumina HiSeq 2000	Skeletal muscle and heart biopsies and autopsies	Human	Transcriptome analysis	GSE86356	[42]
Microarray	Human Exon 1.0 ST array	Skeletal muscle biopsies	Human	Alternative splicing	GSE48828	[47]
LC-MS/MS	EASY-nLC 1200-rbitrap Tribid MS	Myoblasts	Human	Global proteome analysis	PXD016056	[49]
iTraq Nano-LC-MS/MS	Ultimate 3000 RSLC LTQ-Orbitrap Velos MS	Cerebellum	Mouse	Global proteome analysis	Not provided	[51]
CLIP-Seq	Illumina Genome Analyzer II	Brain	Human, mouse	RBP binding sites, alternative polyadenylation	GSE68890	[54]
Microarray	Clariom D Arrays	Cell culture	Human	Transcriptome analysis	GSE164057	[55]
RNA-Seq	Illumina HiSeq 2500	Astrocytes, oligodendrocytes, and neurons	Mouse	Transcriptome analysis	GSE162093	[56]
2D WB and nano LC-MS/MS	Nano RSLC-Q	Astrocytes	Mouse	Phosphoproteome analysis	PXD025011	[56]
RNA-Seq	Illumina NextSeq 500	Frontal cortex biopsies	Human	Transcriptome analysis	GSE157428	[57]
CLIP-Seq	Illumina Genome Analyzer II	Heart	Chicken	RBP binding sites	GSE67360	[58]
RNA-Seq	Illumina HiSeq 2000	Muscle, heart	Mouse	Transcriptome analysis	GSE61893	[59]
CLIP-Seq	Illumina Genome Analyzer II	Muscle, heart	Mouse	RBP binding sites	GSE61893	[59]
Microarray	Illumina MouseWG-6 v2.0 expression beadchip	Heart	Mouse	Transcriptome analysis	GSE48991	[60]
RNA-Seq	Illumina HiSeq 4000	Heart	Mouse	Transcriptome analysis	GSE126771	[61]
RNA-Seq	Illumina NovaSeq 6000	Heart	Mouse	Transcriptome analysis	GSE164825	[62]
Microarray	HumanHT-12 v3 Expression BeadChip	Lens epithelial	Human	Transcriptome analysis	E-MEXP-3365	[64]
RNA-Seq	Illumina HiSeq 2500, Illumina NextSeq 500	Thymus	Human, mouse	Transcriptome analysis	GSE138691	[66]
RNA-Seq	Illumina HiSeq 2500	Biceps brachii	Human	miRNA/mRNA interactions	GSE108592	[73]
RNA-Seq	Illumina NextSeq 500	Blood Muscles, heart, and brain	Human, mouse	miRNA analysis	PRJEB46413	[74]
RNA-Seq	Illumina NextSeq 550	Cell culture	Human	Transcriptome analysis	GSE128844	[82]
RNA-Seq	Illumina NextSeq 500	Quadriceps	Mouse	Transcriptome analysis	PRJNA555349	[84]
RNA-Seq	Illumina HiSeq 2000	Cell culture	Human	Transcriptome analysis	GSE138789	[85]