Table 3.

Summary of the genetic diversity in three sub-genomes and chromosomes of this wheat panel and evaluation of the effective number of independent SNPs, including the suggested p-value thresholds.

Chromosome	No. of Markers	Effective Number	Effective Ratio	Suggested p-Value	% Markers	Length (Mb)	Marker Density	He	PIC
1A	28793	5643.19	0.20	1.77 × 10−4	7.00	594.02	48.47	0.65	0.26
2A	28676	6088.17	0.21	1.64 × 10−4	6.97	780.76	36.73	0.71	0.28
3A	19366	4607.43	0.24	2.17 × 10−4	4.70	750.73	25.80	0.68	0.28
4A	17856	4241.96	0.24	2.36 × 10−4	4.34	744.54	23.98	0.66	0.27
5A	22482	4935.88	0.22	2.03 × 10−4	5.46	709.76	31.68	0.78	0.31
6A	16438	3851.64	0.23	2.60 × 10−4	3.99	617.97	26.60	0.73	0.29
7A	28190	6297.36	0.22	1.59 × 10−4	6.85	736.69	38.27	0.68	0.27
1B	20584	4750.1	0.23	2.11 × 10−4	5.00	689.38	29.86	0.75	0.30
2B	28715	6701.21	0.23	1.49 × 10−4	6.98	801.25	35.84	0.73	0.29
3B	45766	7920.52	0.17	1.26 × 10−4	11.12	830.70	55.09	0.78	0.31
4B	13130	3016.41	0.23	3.32 × 10−4	3.19	673.47	19.50	0.72	0.29
5B	33874	6596.79	0.19	1.52 × 10−4	8.23	713.02	47.51	0.79	0.31
6B	25549	5554.71	0.22	1.80 × 10−4	6.21	720.95	35.44	0.69	0.28
7B	17040	4491.9	0.26	2.23 × 10−4	4.14	750.61	22.70	0.72	0.29
1D	10597	3058.85	0.29	3.27 × 10−4	2.57	495.44	21.39	0.68	0.28
2D	10430	3731.57	0.36	2.68 × 10−4	2.53	651.81	16.00	0.69	0.28
3D	7291	2668.7	0.37	3.75 × 10−4	1.77	615.48	11.85	0.67	0.27
4D	4128	1702.71	0.41	5.87 × 10−4	1.00	509.85	8.10	0.66	0.27
5D	8437	3285.78	0.39	3.04 × 10−4	2.05	566.04	14.91	0.65	0.26
6D	7486	2940.59	0.39	3.40 × 10−4	1.82	473.56	15.81	0.64	0.26
7D	10110	3669.4	0.36	2.73 × 10−4	2.46	638.65	15.83	0.64	0.26
A genome	161801				39.31	4934.47	32.79	0.70	0.28
B genome	184658				44.86	5719.38	32.29	0.74	0.30
D genome	58479				14.21	3950.83	14.80	0.66	0.27
Total	404938	95754.87				14,064.68	28.79	0.70	0.28
Average				2.51 × 10−4