| 1P | One-photon |
| 2P | Two-photon |
| AAV | Adeno-associated virus |
| ABI | Acute brain injury |
| Arch | Archaerhodopsin |
| BiPOLES | Bidirectional pair of opsins for light-induced excitation and silencing |
| ChETA | Channelrhodopsin-2 with E123T mutation |
| ChR2 | Channelrhodopsin-2 |
| ChRs | Channelrhodopsins |
| eNpHR | Enhanced NpHR |
| GAP43 | Growth-associated factor 43 |
| iM1 | Ipsilesional primary motor cortex |
| LCN | Lateral cerebellar nucleus |
| LED | Light-emitting diode |
| mTBI | Mild traumatic brain injury |
| NHP | Non-human primates |
| NpHR | Halorhodopsins |
| ReaChR | Red-activatable channelrhodopsin |
| RSC | Retrosplenial cortex |
| SCI | Spinal cord injury |
| TBI | Traumatic brain injury |
| VChR1 | Volvox carteri channelrhodopsin-1 |
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