Table 1.
The differentially expressed circRNAs ranked by their RNA-seq results.
| circRNA ID | circRNA type | Locus | p value | Log2 FC |
|---|---|---|---|---|
| Upregulated circRNAs | ||||
| chr1:232138805-232148068+ | Sense overlapping | chr1 | 1.372∗10−7 | 7.5470 |
| chr5:79444533-79448528- | Exonic | chr5 | 0.0206 | 5.6229 |
| circARSB | Exonic | chr2 | 0.0366 | 5.3489 |
| circAKT3 | Exonic | chr13 | 0.0437 | 5.2632 |
| chr3:111563809-111567731+ | Exonic | chr3 | 0.0470 | 5.2259 |
| chr2:207700606-207729912+ | Exonic | chr2 | 0.0497 | 5.1965 |
| chr6:137274621-137292892+ | Sense overlapping | chr6 | 0.0011 | 2.6235 |
| Downregulated circRNAs | ||||
| chr5:21834978-21835133- | Sense overlapping | chr5 | 0.0196 | -5.5534 |
| chr19:50369748-50371831+ | Intergenic | chr19 | 0.023867 | -5.46765 |
| chr9:88377072-88400815+ | Exonic | chr9 | 0.0246 | -5.4527 |
| chr1:228117553-228117771- | Intergenic | chr1 | 0.0281 | -5.3943 |
| circTRPM7 | Exonic | chr3 | 0.0303 | -5.3608 |
| chr14:43212130-43221970+ | Exonic | chr14 | 0.0328 | -5.3251 |
| circPTEN | Exonic | chr1 | 0.0436 | -5.1899 |
| chr1:181594948-181599334- | Exonic | chr1 | 0.0491 | -5.1317 |
| chr1:255194723-255196140- | Exonic | chr1 | 0.0392 | -3.4921 |
| chr1:232142345-232145992+ | Sense overlapping | chr1 | 0.0247 | -1.7518 |
Note: circRNA ID: the circRNA ID found in circBase (http://circbase.mdc-berlin.de). circRNA type: circRNAs were classified into five types: “exonic,” “intronic,” “antisense,” “intragenic,” and “intergenic.” p value: p value was calculated from paired t-test. FDR: FDR was calculated from Benjamini-Hochberg FDR. Fold change: the absolute ratio (no log scale) of normalized intensities between the two conditions.