Table 2.
A list of existing HLA reference panels
| Population | HLA typing method | Sample size | URL | Year | Reference |
|---|---|---|---|---|---|
| Europeans | SSOP | 5225 | http://software.broadinstitute.org/mpg/snp2hla/ | 2013 | [29] |
| Korean | NGS | 413 | https://sites.google.com/site/scbaehanyang/hla_panel | 2014 | [30] |
| East and South Asians | SSOP | 530 | http://software.broadinstitute.org/mpg/snp2hla/ | 2014 | [31] |
| Japanese | SSOP | 908 | https://humandbs.biosciencedbc.jp/hum0028-v2 | 2015 | [32] |
| Han-Chinese | NGS | 10,689 | http://gigadb.org/dataset/100156 | 2016 | [33] |
| Japanese | NGS | 1120 | https://humandbs.biosciencedbc.jp/en/hum0114-v2 | 2019 | [6] |
| Finnish | SSOP, SSP, SBT | 1150 | NA | 2020 | [34] |
| Europeans | NGS | 401 | NA | 2020 | [35] |
| Taiwanese | NGS | 1012 | NA | 2020 | [36] |
| Multi-ethnicity | NGS | 21,546 | https://github.com/immunogenomics/HLA-TAPAS/ | 2021 | [26] |
SSOP sequence-specific oligonucleotide probe, NGS next-generation sequencing, SSP sequence-specific primer, SBT sequencing-based typing