Table 2.

Putative causal variants with PIP > 95% for autoimmune disorders. See Table 1 for trait abbreviations

Trait	Variant	Gene	Function	PIP
CD	rs2066844	NOD2	R702W	99.9%
CD	rs2066845	NOD2	G908R	99.9%
CD	rs5743293	NOD2	Fs1007insC	99.9%
CD	rs61839660	IL2RA	Intronic	99.9%
CD	rs7307562	LRRK2	Intronic	99.9%
CD	rs5743271	NOD2	N289S	99.3%
CD	rs72796367	NOD2	Intronic	98.3%
CD	rs41313262	IL23R	V362I	97.3%
CD	rs28701841	PRDM1	Intergenic	97.1%
UC	rs6017342	HNF4A	Intergenic	99.9%
UC	rs35667974	IFIH1	I923V	99.4%
UC	rs4676408	GPR35	Intergenic	99.4%
IBD	rs6062496	RTEL1-TNFRSF6B	Intronic	99.6%
IBD	rs141992399	CARD9	1434 + 1G > C	99.5%
IBD	rs74465132	IKZF1	Intergenic	99.4%
IBD	rs10748781	NKX2-3	Intergenic	99.0%
IBD	rs35874463	SMAD3	I170V	98.9%
IBD	rs1887428	JAK2	Intergenic	97.4%
SLE	rs2736100	TERT	Intronic	100.0%
SLE	rs2431697	PTTG1-MIR146A	Intergenic	99.9%
SLE	rs2297550	IKBKE	TF binding site	99.7%
SLE	rs7097397	WDFY4	Arg1816Gln	99.3%
SLE	rs2205960	TNFSF4	Intergenic	95.7%
T1D	rs34536443	TYK2	P1104A	100.0%
MS	rs533259	RNASEL	Intronic	100.0%
MS	rs733724	HACE1	Intronic	98.0%
PSOR	rs17716942	KCNH7	Intronic	100.0%
PSOR	rs12188300	IL12B	Intergenic	100.0%
PSOR	rs33980500	TRAF3IP2-AS1	D10N	100.0%
PSOR	rs11795343	DDX58	Intronic	99.7%
PSOR	rs8016947	NFKBIA	Intergenic	100.0%
PSOR	rs28998802	NOS2	Intronic	100.0%
PSOR	rs34536443	TYK2	P1104A	99.6%%
CeD	rs1893592	UBASH3A	Intronic	98.0%