Table 3.
Purpose | Primer ID | Primer sequences | Binding region (bp) | Anneal temperature/°C |
---|---|---|---|---|
Cloning | LPIN1_F | CTCGAGCCTAGGAGCCCAAGTCAGGT | − 1878 | 61.5 |
LPIN1_R | CCCAAGCTTGCTGCCTTTGTATGCAAACACCC | + 42 | 61.5 | |
5’ deletion | F-1523 | CCGCTCGAGTCAGACAGTGGAGGAGTCGTAA | − 1523 | 59.2 |
F-1264 | CCGCTCGAGATACTGGCGTGGGTAGCCGTTCC | − 1264 | 61.2 | |
F-953 | CCGCTCGAGGTTAGTGACAGGGCTTGGAGTAT | − 953 | 59.4 | |
F-666 | CCGCTCGAGCTGGGTGATTGCAGACCA | − 666 | 61.4 | |
F-416 | CCGCTCGAGCTTCGCCAACGAGCACCAGA | − 416 | 62.9 | |
F-336 | CCGCTCGAGACGGGCACTCTTGCTTCCTT | − 336 | 62.9 | |
F-172 | CCGCTCGAGGGCTCACTCCTCGAAAGGGC | − 172 | 64.7 | |
F-88 | CCGCTCGAGCTCTCGCACCACCCCGCTG | − 88 | 65 | |
R + 42 | CCCAAGCTTGCTGCCTTTGTATGCAAACACCC | + 42 | 61.5 | |
Site-directed mutation | PPRE1 | TGGCCTTGTGACAG | 62 | |
PPRE2 | GGGTCGAAAGATCT | 62 | ||
PPRE1-mut | CCCTGCAAAAGTCTGGAGTTGACACAGTAATAGGGAGAGG | 59.2 | ||
PPRE1-anti-mut | CCTCTCCCTATTACTGTGTCAACTCCAGACTTTTGCAGGG | 61.2 | ||
PPRE2-mut | GCCCCGGGGGCGGTATCGAAAGAGTTCTCGCACCAC | 59.4 | ||
PPRE2-anti-mut | GTGGTGCGAGAACTCTTTCGATACCGCCCCCGGGGC | 61.4 |
Plus ( +) and minus (-) indicate the number of nucleotides upstream (−) and downstream ( +) from the transcriptional start site. The underlined bases are the restriction site. The bases of italic are the protective bases. Mutation bases are shown in bold font.