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. 2022 Feb 11;13:826. doi: 10.1038/s41467-022-28453-y

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© The Author(s) 2022

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a The total number of trans-eQTL targeting genes located either in the same genome (A → A, B → B, D → D) or in different genomes (A → B, A → D, B → A, B → D, D → A, D → B). b Location of eQTL relative to positions of target genes on wheat chromosomes 2A, 2B, and 2D in wheat spikes. c. Distribution of Spearman Correlation Coefficient (SCC) estimated for the pairs of homoeologs that either share at least one eQTL or do not share any eQTL. d The relationship between cis-eQTL minor allele frequency and effect size (absolute values) for two groups of genes, homoeologs, and singletons. Box shows the median and interquartile ranges (IQR). The end of the top line is the maximum or the third quartile (Q) + 1.5 × IQR. The end of the bottom line denotes either the minimum or the first Q − 1.5 × IQR. e Distribution of expression correlation values between the pairs of homoeologs for various eQTL - target gene configurations. A pair of homoeologs from chromosomes 3B and 3D was used to illustrate locations of cis- and trans-eQTL relative to their target genes. Source data are provided as a Source Data file.