Table 3.

Performances of different methods on TS0 (divided by length interval, pairing cutoff = 0.5).

Method	STY					PPV					MCC
	100	200	300	400	500	100	200	300	400	500	100	200	300	400	500
IPknot	0.623	0.494	0.426	0.414	0.405	0.582	0.449	0.420	0.474	0.467	0.590	0.460	0.416	0.435	0.432
RNAfold	0.627	0.561	0.483	0.457	0.467	0.507	0.413	0.347	0.386	0.394	0.551	0.473	0.405	0.414	0.427
SPOT-RNA	0.778	0.584	0.525	0.414	0.376	0.650	0.517	0.533	0.533	0.505	0.702	0.539	0.518	0.463	0.433
2dRNA-LD	0.639	0.496	0.463	0.476	0.350	0.775	0.711	0.798	0.786	0.791	0.691	0.576	0.579	0.591	0.508